FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8898, 232 aa
  1>>>pF1KB8898 232 - 232 aa - 232 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.8368+/-0.000879; mu= 4.1743+/- 0.054
 mean_var=392.3536+/-79.466, 0's: 0 Z-trim(118.2): 81  B-trim: 0 in 0/54
 Lambda= 0.064749
 statistics sampled from 19062 (19148) to 19062 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.588), width:  16
 Scan time:  2.510

The best scores are:                                      opt bits E(32554)
CCDS1552.1 MIXL1 gene_id:83881|Hs108|chr1          ( 232) 1595 161.4 4.5e-40
CCDS60432.1 MIXL1 gene_id:83881|Hs108|chr1         ( 240) 1569 159.0 2.5e-39


>>CCDS1552.1 MIXL1 gene_id:83881|Hs108|chr1               (232 aa)
 initn: 1595 init1: 1595 opt: 1595  Z-score: 833.0  bits: 161.4 E(32554): 4.5e-40
Smith-Waterman score: 1595; 100.0% identity (100.0% similar) in 232 aa overlap (1-232:1-232)

               10        20        30        40        50        60
pF1KB8 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 ALTLLPESRIQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLKPQLPLEVD
              130       140       150       160       170       180

              190       200       210       220       230  
pF1KB8 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 VNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF
              190       200       210       220       230  

>>CCDS60432.1 MIXL1 gene_id:83881|Hs108|chr1              (240 aa)
 initn: 1058 init1: 891 opt: 1569  Z-score: 819.7  bits: 159.0 E(32554): 2.5e-39
Smith-Waterman score: 1569; 96.7% identity (96.7% similar) in 240 aa overlap (1-232:1-240)

               10        20        30        40        50        60
pF1KB8 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 MATAESRALQFAEGAAFPAYRAPHAGGALLPPPSPAAALLPAPPAGPGPATFAGFLGRDP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 GPAPPPPASLGSPAPPKGAAAPSASQRRKRTSFSAEQLQLLELVFRRTRYPDIHLRERLA
               70        80        90       100       110       120

              130               140       150       160       170  
pF1KB8 ALTLLPESRIQ--------VWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLK
       :::::::::::        :::::::::::::::::::::::::::::::::::::::::
CCDS60 ALTLLPESRIQLLFSPLFQVWFQNRRAKSRRQSGKSFQPLARPEIILNHCAPGTETKCLK
              130       140       150       160       170       180

            180       190       200       210       220       230  
pF1KB8 PQLPLEVDVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS60 PQLPLEVDVNCLPEPNGVGGGISDSSSQGQNFETCSPLSEDIGSKLDSWEEHIFSAFGNF
              190       200       210       220       230       240




232 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:46:32 2016 done: Mon Nov  7 17:46:33 2016
 Total Scan time:  2.510 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]