Result of FASTA (omim) for
pFN21AB8874
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8874, 164 aa
1>>>pF1KB8874 164 - 164 aa - 164 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.7700+/-0.000287; mu= 13.9962+/- 0.018
mean_var=129.8949+/-25.232, 0's: 0 Z-trim(122.0): 30 B-trim: 80 in 1/55
Lambda= 0.112533
statistics sampled from 39473 (39513) to 39473 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.463), width: 16
Scan time: 6.340
The best scores are: opt bits E(85289)
NP_001155044 (OMIM: 604877) transcription factor M ( 164) 1055 180.9 8.1e-46
NP_001155045 (OMIM: 604877) transcription factor M ( 164) 1055 180.9 8.1e-46
NP_036455 (OMIM: 604877) transcription factor MafF ( 164) 1055 180.9 8.1e-46
NP_001155046 (OMIM: 604877) transcription factor M ( 135) 877 151.9 3.6e-37
XP_006715836 (OMIM: 600197) PREDICTED: transcripti ( 156) 618 109.9 1.8e-24
XP_005249908 (OMIM: 600197) PREDICTED: transcripti ( 156) 618 109.9 1.8e-24
NP_002351 (OMIM: 600197) transcription factor MafK ( 156) 618 109.9 1.8e-24
XP_011521880 (OMIM: 602020) PREDICTED: transcripti ( 162) 547 98.4 5.4e-21
NP_116100 (OMIM: 602020) transcription factor MafG ( 162) 547 98.4 5.4e-21
NP_002350 (OMIM: 602020) transcription factor MafG ( 162) 547 98.4 5.4e-21
NP_005452 (OMIM: 166300,608968,617041) transcripti ( 323) 344 65.8 7e-11
NP_001026974 (OMIM: 177075,601088,610202) transcri ( 373) 327 63.1 5.2e-10
XP_016878724 (OMIM: 177075,601088,610202) PREDICTE ( 383) 327 63.1 5.3e-10
XP_016878722 (OMIM: 177075,601088,610202) PREDICTE ( 383) 327 63.1 5.3e-10
XP_016878723 (OMIM: 177075,601088,610202) PREDICTE ( 383) 327 63.1 5.3e-10
NP_005351 (OMIM: 177075,601088,610202) transcripti ( 403) 327 63.2 5.5e-10
NP_963883 (OMIM: 610303) transcription factor MafA ( 353) 310 60.3 3.4e-09
XP_016876839 (OMIM: 162080,613750) PREDICTED: neur ( 132) 294 57.2 1.1e-08
XP_011535108 (OMIM: 162080,613750) PREDICTED: neur ( 234) 294 57.5 1.6e-08
XP_005267767 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
XP_005267766 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
XP_011535106 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
XP_011535104 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
XP_005267765 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
XP_011535107 (OMIM: 162080,613750) PREDICTED: neur ( 237) 287 56.4 3.5e-08
NP_006168 (OMIM: 162080,613750) neural retina-spec ( 237) 287 56.4 3.5e-08
XP_011535103 (OMIM: 162080,613750) PREDICTED: neur ( 339) 287 56.6 4.4e-08
>>NP_001155044 (OMIM: 604877) transcription factor MafF (164 aa)
initn: 1055 init1: 1055 opt: 1055 Z-score: 943.6 bits: 180.9 E(85289): 8.1e-46
Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_001155045 (OMIM: 604877) transcription factor MafF (164 aa)
initn: 1055 init1: 1055 opt: 1055 Z-score: 943.6 bits: 180.9 E(85289): 8.1e-46
Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_036455 (OMIM: 604877) transcription factor MafF iso (164 aa)
initn: 1055 init1: 1055 opt: 1055 Z-score: 943.6 bits: 180.9 E(85289): 8.1e-46
Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_036 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
::::::::::::::::::::::::::::::::::::::::::::
NP_036 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
130 140 150 160
>>NP_001155046 (OMIM: 604877) transcription factor MafF (135 aa)
initn: 877 init1: 877 opt: 877 Z-score: 788.4 bits: 151.9 E(85289): 3.6e-37
Smith-Waterman score: 877; 100.0% identity (100.0% similar) in 135 aa overlap (30-164:1-135)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:::::::::::::::::::::::::::::::
NP_001 MGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
10 20 30
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
40 50 60 70 80 90
130 140 150 160
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
100 110 120 130
>>XP_006715836 (OMIM: 600197) PREDICTED: transcription f (156 aa)
initn: 608 init1: 608 opt: 618 Z-score: 560.4 bits: 109.9 E(85289): 1.8e-24
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
XP_006 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
XP_006 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::. . :: .::::::::: :..
XP_006 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>XP_005249908 (OMIM: 600197) PREDICTED: transcription f (156 aa)
initn: 608 init1: 608 opt: 618 Z-score: 560.4 bits: 109.9 E(85289): 1.8e-24
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
XP_005 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
XP_005 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::. . :: .::::::::: :..
XP_005 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>NP_002351 (OMIM: 600197) transcription factor MafK [Ho (156 aa)
initn: 608 init1: 608 opt: 618 Z-score: 560.4 bits: 109.9 E(85289): 1.8e-24
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:...: .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
NP_002 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
:::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
NP_002 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::. . :: .::::::::: :..
NP_002 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS
130 140 150
>>XP_011521880 (OMIM: 602020) PREDICTED: transcription f (162 aa)
initn: 568 init1: 532 opt: 547 Z-score: 497.9 bits: 98.4 E(85289): 5.4e-21
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:.. ..::::.::: .:: :.:: :. .::::::.:::::: ::...:::::::::
XP_011 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
XP_011 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VA-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::: : : :: .::::::::
XP_011 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
>>NP_116100 (OMIM: 602020) transcription factor MafG [Ho (162 aa)
initn: 568 init1: 532 opt: 547 Z-score: 497.9 bits: 98.4 E(85289): 5.4e-21
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:.. ..::::.::: .:: :.:: :. .::::::.:::::: ::...:::::::::
NP_116 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
NP_116 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VA-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::: : : :: .::::::::
NP_116 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
>>NP_002350 (OMIM: 602020) transcription factor MafG [Ho (162 aa)
initn: 568 init1: 532 opt: 547 Z-score: 497.9 bits: 98.4 E(85289): 5.4e-21
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-142:1-156)
10 20 30 40 50 60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
:.. ..::::.::: .:: :.:: :. .::::::.:::::: ::...:::::::::
NP_002 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
NP_002 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
70 80 90 100 110 120
130 140 150 160
pF1KB8 VA-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
:: :::: : : :: .::::::::
NP_002 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS
130 140 150 160
164 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:04:52 2016 done: Sun Nov 6 05:04:53 2016
Total Scan time: 6.340 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]