FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8874, 164 aa
  1>>>pF1KB8874 164 - 164 aa - 164 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.3300+/-0.000713; mu= 10.6538+/- 0.043
 mean_var=128.9670+/-24.955, 0's: 0 Z-trim(114.5): 16  B-trim: 17 in 1/52
 Lambda= 0.112937
 statistics sampled from 15083 (15096) to 15083 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.798), E-opt: 0.2 (0.464), width:  16
 Scan time:  2.180

The best scores are:                                      opt bits E(32554)
CCDS13968.1 MAFF gene_id:23764|Hs108|chr22         ( 164) 1055 181.6 1.9e-46
CCDS54528.1 MAFF gene_id:23764|Hs108|chr22         ( 135)  877 152.5 9.1e-38
CCDS5325.1 MAFK gene_id:7975|Hs108|chr7            ( 156)  618 110.3 5.1e-25
CCDS11793.1 MAFG gene_id:4097|Hs108|chr17          ( 162)  547 98.8 1.6e-21
CCDS13311.1 MAFB gene_id:9935|Hs108|chr20          ( 323)  344 66.0 2.4e-11


>>CCDS13968.1 MAFF gene_id:23764|Hs108|chr22              (164 aa)
 initn: 1055 init1: 1055 opt: 1055  Z-score: 947.2  bits: 181.6 E(32554): 1.9e-46
Smith-Waterman score: 1055; 100.0% identity (100.0% similar) in 164 aa overlap (1-164:1-164)

               10        20        30        40        50        60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
               70        80        90       100       110       120

              130       140       150       160    
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
              130       140       150       160    

>>CCDS54528.1 MAFF gene_id:23764|Hs108|chr22              (135 aa)
 initn: 877 init1: 877 opt: 877  Z-score: 791.5  bits: 152.5 E(32554): 9.1e-38
Smith-Waterman score: 877; 100.0% identity (100.0% similar) in 135 aa overlap (30-164:1-135)

               10        20        30        40        50        60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
                                    :::::::::::::::::::::::::::::::
CCDS54                              MGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
                                            10        20        30 

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS54 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
              40        50        60        70        80        90 

              130       140       150       160    
pF1KB8 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS54 VAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
             100       110       120       130     

>>CCDS5325.1 MAFK gene_id:7975|Hs108|chr7                 (156 aa)
 initn: 608 init1: 608 opt: 618  Z-score: 562.7  bits: 110.3 E(32554): 5.1e-25
Smith-Waterman score: 618; 68.0% identity (88.0% similar) in 150 aa overlap (1-148:1-148)

               10        20        30        40        50        60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
       :...:  .::::.:.: .::.: :::. :...::::::.:::::. ::::::::::::::
CCDS53 MTTNPKPNKALKVKKEAGENAPVLSDDELVSMSVRELNQHLRGLTKEEVTRLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
       :::::::::.::: :::::..:. ::..::.::::::..:::::::::.: :::: :::.
CCDS53 NRGYAASCRIKRVTQKEELERQRVELQQEVEKLARENSSMRLELDALRSKYEALQTFART
               70        80        90       100       110       120

                130       140       150       160    
pF1KB8 VAAARGPA--TLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
       ::  :::.  . :: .:::::::::  :..                
CCDS53 VA--RGPVAPSKVATTSVITIVKSTELSSTSVPFSAAS        
                130       140       150              

>>CCDS11793.1 MAFG gene_id:4097|Hs108|chr17               (162 aa)
 initn: 568 init1: 532 opt: 547  Z-score: 499.9  bits: 98.8 E(32554): 1.6e-21
Smith-Waterman score: 564; 65.4% identity (80.1% similar) in 156 aa overlap (1-142:1-156)

               10        20        30        40        50        60
pF1KB8 MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLKQRRRTLK
       :..   ..::::.::: .::   :.:: :. .::::::.:::::: ::...:::::::::
CCDS11 MTTPNKGNKALKVKREPGENGTSLTDEELVTMSVRELNQHLRGLSKEEIVQLKQRRRTLK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 NRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEALQGFARS
       ::::::::::::: :::::.:::.::..::.::: :::.:.:::::::.: :::: :::.
CCDS11 NRGYAASCRVKRVTQKEELEKQKAELQQEVEKLASENASMKLELDALRSKYEALQTFART
               70        80        90       100       110       120

                     130              140       150       160    
pF1KB8 VA-----AARGP--ATL-------VAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
       ::      ::::  : :       :: .::::::::                      
CCDS11 VARSPVAPARGPLAAGLGPLVPGKVAATSVITIVKSKTDARS                
              130       140       150       160                  

>>CCDS13311.1 MAFB gene_id:9935|Hs108|chr20               (323 aa)
 initn: 374 init1: 333 opt: 344  Z-score: 317.3  bits: 66.0 E(32554): 2.4e-11
Smith-Waterman score: 344; 50.0% identity (80.6% similar) in 108 aa overlap (24-129:211-318)

                      10        20        30        40        50   
pF1KB8        MSVDPLSSKALKIKRELSENTPHLSDEALMGLSVRELNRHLRGLSAEEVTRLK
                                     .::. :...:::::::::::.. .:: :::
CCDS13 QQLPTSHPGPGPHATASATAAGGNGSVEDRFSDDQLVSMSVRELNRHLRGFTKDEVIRLK
              190       200       210       220       230       240

            60        70        80        90       100       110   
pF1KB8 QRRRTLKNRGYAASCRVKRVCQKEELQKQKSELEREVDKLARENAAMRLELDALRGKCEA
       :.:::::::::: ::: ::: ::..:...:..: ..:..: .: . .  : :: . ::: 
CCDS13 QKRRTLKNRGYAQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKCEK
              250       260       270       280       290       300

             120       130       140       150       160    
pF1KB8 L--QGFARSVAAARGPATLVAPASVITIVKSTPGSGSGPAHGPDPAHGPASCS
       :  .:: .. ... .:..                                   
CCDS13 LANSGFREAGSTSDSPSSPEFFL                              
              310       320                                 




164 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:04:51 2016 done: Sun Nov  6 05:04:51 2016
 Total Scan time:  2.180 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]