Result of FASTA (omim) for
pFN21AB8859
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8859, 95 aa
1>>>pF1KB8859 95 - 95 aa - 95 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.3908+/-0.000322; mu= 14.0923+/- 0.020
mean_var=57.4404+/-11.784, 0's: 0 Z-trim(116.5): 91 B-trim: 913 in 2/50
Lambda= 0.169225
statistics sampled from 27563 (27677) to 27563 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.325), width: 16
Scan time: 4.380
The best scores are: opt bits E(85289)
NP_005971 (OMIM: 600614) protein S100-P [Homo sapi ( 95) 601 154.0 3.4e-38
NP_006262 (OMIM: 176940) protein S100-A1 [Homo sap ( 94) 325 86.6 6.4e-18
XP_016883913 (OMIM: 176990) PREDICTED: protein S10 ( 92) 315 84.2 3.4e-17
NP_006263 (OMIM: 176990) protein S100-B [Homo sapi ( 92) 315 84.2 3.4e-17
XP_011541542 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_011541546 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_016864660 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_011541543 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
NP_570128 (OMIM: 610103) protein S100-Z [Homo sapi ( 99) 305 81.8 2e-16
XP_016864661 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_016864662 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_011541541 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
XP_011541547 (OMIM: 610103) PREDICTED: protein S10 ( 99) 305 81.8 2e-16
NP_005969 (OMIM: 176993) protein S100-A2 [Homo sap ( 97) 259 70.5 4.7e-13
NP_062427 (OMIM: 114210) protein S100-A4 [Homo sap ( 101) 258 70.3 5.7e-13
NP_002952 (OMIM: 114210) protein S100-A4 [Homo sap ( 101) 258 70.3 5.7e-13
NP_002957 (OMIM: 114085) protein S100-A10 [Homo sa ( 97) 257 70.0 6.5e-13
NP_005612 (OMIM: 603112) protein S100-A12 [Homo sa ( 92) 253 69.0 1.2e-12
NP_005611 (OMIM: 603114) protein S100-A11 [Homo sa ( 105) 250 68.3 2.3e-12
XP_011507833 (OMIM: 616284) PREDICTED: filaggrin-2 (2239) 243 67.8 7.2e-11
NP_001014364 (OMIM: 616284) filaggrin-2 [Homo sapi (2391) 243 67.8 7.6e-11
NP_002956 (OMIM: 123886) protein S100-A9 [Homo sap ( 114) 214 59.6 1.1e-09
NP_055439 (OMIM: 114110) protein S100-A6 [Homo sap ( 90) 209 58.3 2.1e-09
XP_016857522 (OMIM: 114110) PREDICTED: protein S10 ( 90) 209 58.3 2.1e-09
NP_002953 (OMIM: 176991) protein S100-A5 [Homo sap ( 92) 208 58.0 2.5e-09
XP_016857520 (OMIM: 176991) PREDICTED: protein S10 ( 92) 208 58.0 2.5e-09
XP_016857521 (OMIM: 176991) PREDICTED: protein S10 ( 92) 208 58.0 2.5e-09
XP_011508162 (OMIM: 176991) PREDICTED: protein S10 ( 104) 208 58.1 2.7e-09
XP_016857519 (OMIM: 176991) PREDICTED: protein S10 ( 110) 208 58.1 2.9e-09
XP_016857518 (OMIM: 176991) PREDICTED: protein S10 ( 133) 208 58.2 3.3e-09
NP_057274 (OMIM: 611312) cornulin [Homo sapiens] ( 495) 205 57.9 1.5e-08
NP_002955 (OMIM: 123885) protein S100-A8 isoform d ( 93) 197 55.4 1.6e-08
NP_001306130 (OMIM: 123885) protein S100-A8 isofor ( 93) 197 55.4 1.6e-08
NP_001306127 (OMIM: 123885) protein S100-A8 isofor ( 101) 197 55.4 1.7e-08
NP_001306126 (OMIM: 123885) protein S100-A8 isofor ( 116) 197 55.4 1.9e-08
NP_001306125 (OMIM: 123885) protein S100-A8 isofor ( 117) 197 55.4 1.9e-08
XP_016885330 (OMIM: 302020) PREDICTED: protein S10 ( 79) 180 51.2 2.6e-07
NP_004048 (OMIM: 302020) protein S100-G [Homo sapi ( 79) 180 51.2 2.6e-07
NP_002951 (OMIM: 176992) protein S100-A3 [Homo sap ( 101) 180 51.2 3.1e-07
NP_001009931 (OMIM: 616293) hornerin [Homo sapiens (2850) 194 55.9 3.4e-07
NP_002007 (OMIM: 135940,146700,605803) filaggrin [ (4061) 195 56.3 3.8e-07
NP_001116437 (OMIM: 613259) repetin [Homo sapiens] ( 784) 187 53.7 4.3e-07
NP_009044 (OMIM: 190370) trichohyalin [Homo sapien (1943) 183 53.1 1.7e-06
NP_001019383 (OMIM: 601989) protein S100-A13 [Homo ( 98) 154 44.9 2.4e-05
XP_011508165 (OMIM: 601989) PREDICTED: protein S10 ( 98) 154 44.9 2.4e-05
NP_001019381 (OMIM: 601989) protein S100-A13 [Homo ( 98) 154 44.9 2.4e-05
XP_016857525 (OMIM: 601989) PREDICTED: protein S10 ( 98) 154 44.9 2.4e-05
NP_001019384 (OMIM: 601989) protein S100-A13 [Homo ( 98) 154 44.9 2.4e-05
XP_016857524 (OMIM: 601989) PREDICTED: protein S10 ( 98) 154 44.9 2.4e-05
XP_011508166 (OMIM: 601989) PREDICTED: protein S10 ( 98) 154 44.9 2.4e-05
>>NP_005971 (OMIM: 600614) protein S100-P [Homo sapiens] (95 aa)
initn: 601 init1: 601 opt: 601 Z-score: 806.8 bits: 154.0 E(85289): 3.4e-38
Smith-Waterman score: 601; 100.0% identity (100.0% similar) in 95 aa overlap (1-95:1-95)
10 20 30 40 50 60
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
10 20 30 40 50 60
70 80 90
pF1KB8 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
:::::::::::::::::::::::::::::::::::
NP_005 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
70 80 90
>>NP_006262 (OMIM: 176940) protein S100-A1 [Homo sapiens (94 aa)
initn: 367 init1: 323 opt: 325 Z-score: 442.7 bits: 86.6 E(85289): 6.4e-18
Smith-Waterman score: 325; 55.7% identity (83.0% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
.:::::: .:.:: .::.::. :.: ::: :.. :: :::.. :: :::::..:
NP_006 MGSELETAMETLINVFHAHSGKEGDKYKLSKKELKELLQTELSGFLDAQKDVDAVDKVMK
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
.:: :::..:::.:..:.:::.: ::...:
NP_006 ELDENGDGEVDFQEYVVLVAALTVACNNFFWENS
70 80 90
>>XP_016883913 (OMIM: 176990) PREDICTED: protein S100-B (92 aa)
initn: 315 init1: 315 opt: 315 Z-score: 429.6 bits: 84.2 E(85289): 3.4e-17
Smith-Waterman score: 315; 51.1% identity (81.1% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
:.::: :: .:::: .::: ::. . : :.::: :...:: ::. :....:::...
XP_016 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
10 20 30 40 50 60
70 80 90
pF1KB8 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
:: .::.. ::.::..::: .:.:::..::
XP_016 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
70 80 90
>>NP_006263 (OMIM: 176990) protein S100-B [Homo sapiens] (92 aa)
initn: 315 init1: 315 opt: 315 Z-score: 429.6 bits: 84.2 E(85289): 3.4e-17
Smith-Waterman score: 315; 51.1% identity (81.1% similar) in 90 aa overlap (1-90:1-90)
10 20 30 40 50 60
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLKD
:.::: :: .:::: .::: ::. . : :.::: :...:: ::. :....:::...
NP_006 MSELEKAMVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMET
10 20 30 40 50 60
70 80 90
pF1KB8 LDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
:: .::.. ::.::..::: .:.:::..::
NP_006 LDNDGDGECDFQEFMAFVAMVTTACHEFFEHE
70 80 90
>>XP_011541542 (OMIM: 610103) PREDICTED: protein S100-Z (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
XP_011 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
XP_011 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>XP_011541546 (OMIM: 610103) PREDICTED: protein S100-Z (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
XP_011 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
XP_011 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>XP_016864660 (OMIM: 610103) PREDICTED: protein S100-Z (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
XP_016 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
XP_016 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>XP_011541543 (OMIM: 610103) PREDICTED: protein S100-Z (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
XP_011 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
XP_011 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>NP_570128 (OMIM: 610103) protein S100-Z [Homo sapiens] (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
NP_570 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
NP_570 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
>>XP_016864661 (OMIM: 610103) PREDICTED: protein S100-Z (99 aa)
initn: 305 init1: 305 opt: 305 Z-score: 416.0 bits: 81.8 E(85289): 2e-16
Smith-Waterman score: 305; 53.4% identity (78.4% similar) in 88 aa overlap (2-89:3-90)
10 20 30 40 50
pF1KB8 MTELETAMGMIIDVFSRYSGSEGSTQTLTKGELKVLMEKELPGFLQSGKDKDAVDKLLK
:.:: :: .: .: ::::.: . :.:::::.:...:: ::. :. . :::...
XP_016 MPTQLEMAMDTMIRIFHRYSGKERKRFKLSKGELKLLLQRELTEFLSCQKETQLVDKIVQ
10 20 30 40 50 60
60 70 80 90
pF1KB8 DLDANGDAQVDFSEFIVFVAAITSACHKYFEKAGLK
::::: : .:::.::.:.:::.: ::. ::
XP_016 DLDANKDNEVDFNEFVVMVAALTVACNDYFVEQLKKKGK
70 80 90
95 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:14:58 2016 done: Mon Nov 7 02:14:58 2016
Total Scan time: 4.380 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]