Result of FASTA (ccds) for
pFN21AB8621
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8621, 870 aa
1>>>pF1KB8621 870 - 870 aa - 870 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6487+/-0.00121; mu= 18.8624+/- 0.072
mean_var=76.6324+/-15.300, 0's: 0 Z-trim(102.7): 41 B-trim: 61 in 1/49
Lambda= 0.146510
statistics sampled from 7036 (7073) to 7036 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.574), E-opt: 0.2 (0.217), width: 16
Scan time: 3.950
The best scores are: opt bits E(32554)
CCDS2259.1 GPR155 gene_id:151556|Hs108|chr2 ( 870) 5741 1224.0 0
CCDS74605.1 GPR155 gene_id:151556|Hs108|chr2 ( 842) 3055 656.2 6.8e-188
>>CCDS2259.1 GPR155 gene_id:151556|Hs108|chr2 (870 aa)
initn: 5741 init1: 5741 opt: 5741 Z-score: 6554.8 bits: 1224.0 E(32554): 0
Smith-Waterman score: 5741; 100.0% identity (100.0% similar) in 870 aa overlap (1-870:1-870)
10 20 30 40 50 60
pF1KB8 MNSNLPAENLTIAVNMTKTLPTAVTHGFNSTNDPPSMSITRLFPALLECFGIVLCGYIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 MNSNLPAENLTIAVNMTKTLPTAVTHGFNSTNDPPSMSITRLFPALLECFGIVLCGYIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 RANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYLQYIYLVAPISLMML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 TLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYLQYIYLVAPISLMML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NPIGFIFCEIQKWKDTQNASQNKIKIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 NPIGFIFCEIQKWKDTQNASQNKIKIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VENFLDGLGNSFSGSALFYLGLTMVGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VENFLDGLGNSFSGSALFYLGLTMVGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LDKGDSVVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LDKGDSVVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISLIWSLAILLLSKKYKQLPHMLTTNLLI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 SAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISLIWSLAILLLSKKYKQLPHMLTTNLLI
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 AQSIVCAGMMIWNFVKEKNFVGQILVFVLLYSSLYSTYLWTGLLAISLFLLKKRERVQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 AQSIVCAGMMIWNFVKEKNFVGQILVFVLLYSSLYSTYLWTGLLAISLFLLKKRERVQIP
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 VGIIIISGWGIPALLVGVLLITGKHNGDSIDSAFFYGKEQMITTAVTLFCSILIAGISLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 VGIIIISGWGIPALLVGVLLITGKHNGDSIDSAFFYGKEQMITTAVTLFCSILIAGISLM
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 CMNQTAQAGSYEGFDQSQSHKVVEPGNTAFEESPAPVNEPELFTSSIPETSCCSCSMGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 CMNQTAQAGSYEGFDQSQSHKVVEPGNTAFEESPAPVNEPELFTSSIPETSCCSCSMGNG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 ELHCPSIEPIANTSTSEPVIPSFEKNNHCVSRCNSQSCILAQEEEQYLQSGDQQLTRHVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 ELHCPSIEPIANTSTSEPVIPSFEKNNHCVSRCNSQSCILAQEEEQYLQSGDQQLTRHVL
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 LCLLLIIGLFANLSSCLWWLFNQEPGRLYVELQFFCAVFNFGQGFISFGIFGLDKHLIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 LCLLLIIGLFANLSSCLWWLFNQEPGRLYVELQFFCAVFNFGQGFISFGIFGLDKHLIIL
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 PFKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 PFKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGT
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 FCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS22 FCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPEQ
790 800 810 820 830 840
850 860 870
pF1KB8 SPPAINANTLQQERYKEIEHSSPPSHSPKT
::::::::::::::::::::::::::::::
CCDS22 SPPAINANTLQQERYKEIEHSSPPSHSPKT
850 860 870
>>CCDS74605.1 GPR155 gene_id:151556|Hs108|chr2 (842 aa)
initn: 3055 init1: 3055 opt: 3055 Z-score: 3486.7 bits: 656.2 E(32554): 6.8e-188
Smith-Waterman score: 5501; 96.8% identity (96.8% similar) in 870 aa overlap (1-870:1-842)
10 20 30 40 50 60
pF1KB8 MNSNLPAENLTIAVNMTKTLPTAVTHGFNSTNDPPSMSITRLFPALLECFGIVLCGYIAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MNSNLPAENLTIAVNMTKTLPTAVTHGFNSTNDPPSMSITRLFPALLECFGIVLCGYIAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RANVITSTQAKGLGNFVSRFALPALLFKNMVVLNFSNVDWSFLYSILIAKASVFFIVCVL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 TLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYLQYIYLVAPISLMML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 TLLVASPDSRFSKAGLFPIFATQSNDFALGYPIVEALYQTTYPEYLQYIYLVAPISLMML
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NPIGFIFCEIQKWKDTQNASQNKIKIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 NPIGFIFCEIQKWKDTQNASQNKIKIVGLGLLRVLQNPIVFMVFIGIAFNFILDRKVPVY
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 VENFLDGLGNSFSGSALFYLGLTMVGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VENFLDGLGNSFSGSALFYLGLTMVGKIKRLKKSAFVVLILLITAKLLVLPLLCREMVEL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 LDKGDSVVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LDKGDSVVNHTSLSNYAFLYGVFPVAPGVAIFATQFNMEVEIITSGMVISTFVSAPIMYV
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 SAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISLIWSLAILLLSKKYKQLPHMLTTNLLI
::::::::::::::::::::::::::::::::::
CCDS74 SAWLLTFPTMDPKPLAYAIQNVSFDISIVSLISL--------------------------
370 380 390
430 440 450 460 470 480
pF1KB8 AQSIVCAGMMIWNFVKEKNFVGQILVFVLLYSSLYSTYLWTGLLAISLFLLKKRERVQIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 --SIVCAGMMIWNFVKEKNFVGQILVFVLLYSSLYSTYLWTGLLAISLFLLKKRERVQIP
400 410 420 430 440 450
490 500 510 520 530 540
pF1KB8 VGIIIISGWGIPALLVGVLLITGKHNGDSIDSAFFYGKEQMITTAVTLFCSILIAGISLM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VGIIIISGWGIPALLVGVLLITGKHNGDSIDSAFFYGKEQMITTAVTLFCSILIAGISLM
460 470 480 490 500 510
550 560 570 580 590 600
pF1KB8 CMNQTAQAGSYEGFDQSQSHKVVEPGNTAFEESPAPVNEPELFTSSIPETSCCSCSMGNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 CMNQTAQAGSYEGFDQSQSHKVVEPGNTAFEESPAPVNEPELFTSSIPETSCCSCSMGNG
520 530 540 550 560 570
610 620 630 640 650 660
pF1KB8 ELHCPSIEPIANTSTSEPVIPSFEKNNHCVSRCNSQSCILAQEEEQYLQSGDQQLTRHVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ELHCPSIEPIANTSTSEPVIPSFEKNNHCVSRCNSQSCILAQEEEQYLQSGDQQLTRHVL
580 590 600 610 620 630
670 680 690 700 710 720
pF1KB8 LCLLLIIGLFANLSSCLWWLFNQEPGRLYVELQFFCAVFNFGQGFISFGIFGLDKHLIIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 LCLLLIIGLFANLSSCLWWLFNQEPGRLYVELQFFCAVFNFGQGFISFGIFGLDKHLIIL
640 650 660 670 680 690
730 740 750 760 770 780
pF1KB8 PFKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 PFKRRLEFLWNNKDTAENRDSPVSEEIKMTCQQFIHYHRDLCIRNIVKERRCGAKTSAGT
700 710 720 730 740 750
790 800 810 820 830 840
pF1KB8 FCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 FCGCDLVSWLIEVGLASDRGEAVIYGDRLVQGGVIQHITNEYEFRDEYLFYRFLQKSPEQ
760 770 780 790 800 810
850 860 870
pF1KB8 SPPAINANTLQQERYKEIEHSSPPSHSPKT
::::::::::::::::::::::::::::::
CCDS74 SPPAINANTLQQERYKEIEHSSPPSHSPKT
820 830 840
870 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 07:36:43 2016 done: Thu Nov 3 07:36:44 2016
Total Scan time: 3.950 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]