Result of FASTA (ccds) for
pFN21AB8608
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8608, 973 aa
1>>>pF1KB8608 973 - 973 aa - 973 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.5482+/-0.00137; mu= -3.3697+/- 0.081
mean_var=331.0712+/-69.853, 0's: 0 Z-trim(107.7): 67 B-trim: 86 in 2/51
Lambda= 0.070488
statistics sampled from 9696 (9730) to 9696 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.299), width: 16
Scan time: 4.920
The best scores are: opt bits E(32554)
CCDS77929.1 USO1 gene_id:8615|Hs108|chr4 ( 973) 6164 642.2 1.4e-183
CCDS75144.1 USO1 gene_id:8615|Hs108|chr4 ( 962) 5461 570.7 4.8e-162
>>CCDS77929.1 USO1 gene_id:8615|Hs108|chr4 (973 aa)
initn: 6164 init1: 6164 opt: 6164 Z-score: 3409.1 bits: 642.2 E(32554): 1.4e-183
Smith-Waterman score: 6164; 99.5% identity (99.6% similar) in 973 aa overlap (1-973:1-973)
10 20 30 40 50 60
pF1KB8 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AMEHLIHVLQTDRSGSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI
:::::::::::::: :::::::::::::::::::::::::::::::::::::::::::::
CCDS77 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QNLLKNNNSNQYFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 DIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 NIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB8 EVQGETETIIATKTTDVEGRLSALSQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS77 EVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB8 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGGQEDED
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS77 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDED
910 920 930 940 950 960
970
pF1KB8 DESEDPGKDLDHI
:::::::::::::
CCDS77 DESEDPGKDLDHI
970
>>CCDS75144.1 USO1 gene_id:8615|Hs108|chr4 (962 aa)
initn: 3574 init1: 2975 opt: 5461 Z-score: 3022.8 bits: 570.7 E(32554): 4.8e-162
Smith-Waterman score: 6046; 98.4% identity (98.5% similar) in 973 aa overlap (1-973:1-962)
10 20 30 40 50 60
pF1KB8 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AMEHLIHVLQTDRSGSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI
:::::::::::::: ::::::::::::::::::::::: ::::::::::::::::::
CCDS75 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNEEEEEV----EENSTRQSEDLGSQFTEI
70 80 90 100 110
130 140 150 160 170 180
pF1KB8 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB8 QNLLKNNNSNQYFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP
::::::::::: ::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB8 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB8 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB8 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB8 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN
::::::::: ::::::::::::::::::::::::::::::::::::::::::::
CCDS75 QCTNILSQG-------SKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN
480 490 500 510 520
550 560 570 580 590 600
pF1KB8 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL
530 540 550 560 570 580
610 620 630 640 650 660
pF1KB8 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD
590 600 610 620 630 640
670 680 690 700 710 720
pF1KB8 DIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG
.:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 NIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG
650 660 670 680 690 700
730 740 750 760 770 780
pF1KB8 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS
710 720 730 740 750 760
790 800 810 820 830 840
pF1KB8 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV
770 780 790 800 810 820
850 860 870 880 890 900
pF1KB8 EVQGETETIIATKTTDVEGRLSALSQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ
:::::::::::::::::::::::: :::::::::::::::::::::::::::::::::::
CCDS75 EVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ
830 840 850 860 870 880
910 920 930 940 950 960
pF1KB8 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGGQEDED
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
CCDS75 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDED
890 900 910 920 930 940
970
pF1KB8 DESEDPGKDLDHI
:::::::::::::
CCDS75 DESEDPGKDLDHI
950 960
973 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 03:34:01 2016 done: Mon Nov 7 03:34:02 2016
Total Scan time: 4.920 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]