Result of FASTA (ccds) for
pFN21AB8544
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8544, 902 aa
1>>>pF1KB8544 902 - 902 aa - 902 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.2529+/-0.00115; mu= 1.5268+/- 0.069
mean_var=180.7790+/-35.909, 0's: 0 Z-trim(108.2): 27 B-trim: 0 in 0/50
Lambda= 0.095389
statistics sampled from 10046 (10061) to 10046 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.669), E-opt: 0.2 (0.309), width: 16
Scan time: 3.200
The best scores are: opt bits E(32554)
CCDS11875.1 RBBP8 gene_id:5932|Hs108|chr18 ( 897) 5928 829.1 0
CCDS11874.1 RBBP8 gene_id:5932|Hs108|chr18 ( 867) 5128 719.0 9.3e-207
CCDS13498.1 RBBP8NL gene_id:140893|Hs108|chr20 ( 664) 455 75.9 2.9e-13
>>CCDS11875.1 RBBP8 gene_id:5932|Hs108|chr18 (897 aa)
initn: 5934 init1: 4684 opt: 5928 Z-score: 4420.2 bits: 829.1 E(32554): 0
Smith-Waterman score: 5928; 99.2% identity (99.3% similar) in 902 aa overlap (1-902:1-897)
10 20 30 40 50 60
pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 MNGDCVMYKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNGDCVMDKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSSMLFYID
:::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS11 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSS-----N
670 680 690 700 710
730 740 750 760 770 780
pF1KB8 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA
720 730 740 750 760 770
790 800 810 820 830 840
pF1KB8 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC
780 790 800 810 820 830
850 860 870 880 890 900
pF1KB8 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ
840 850 860 870 880 890
pF1KB8 KT
::
CCDS11 KT
>>CCDS11874.1 RBBP8 gene_id:5932|Hs108|chr18 (867 aa)
initn: 5134 init1: 4684 opt: 5128 Z-score: 3825.4 bits: 719.0 E(32554): 9.3e-207
Smith-Waterman score: 5135; 96.8% identity (98.0% similar) in 814 aa overlap (1-814:1-801)
10 20 30 40 50 60
pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNERNTLQEENKKLSEQLQQKIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NPHVRYIEQTHTKLEHSVCANEMRKVSKSSTHPQHNPNENEILVADTYDQSQSPMAKAHG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TSSYTPDKSSFNLATVVAETLGLGVQEESETQGPMSPLGDELYHCLEGNHKKQPFEESTR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NTEDSLRFSDSTSKTPPQEELPTRVSSPVFGATSSIKSGLDLNTSLSPSLLQPGKKKHLK
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TLPFSNTCISRLEKTRSKSEDSALFTHHSLGSEVNKIIIQSSNKQILINKNISESLGEQN
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 RTEYGKDSNTDKHLEPLKSLGGRTSKRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFS
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 MNGDCVMYKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD
::::::: ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MNGDCVMDKPLDLSDRFSAIQRQEKSQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASD
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 GNCTLPKDSPGEPCSQECIILQPLNKCSPDNKPSLQIKEENAVFKIPLRPRESLETENVL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 DDIKSAGSHEPIKIQTRSDHGGCELASVLQLNPCRTGKIKSLQNNQDVSFENIQWSIDPG
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSSMLFYID
:::::::::::::::::::::::::::::::::::::::::::::::::::::: .
CCDS11 ADLSQYKMDVTVIDTKDGSQSKLGGETVDMDCTLVSETVLLKMKKQEQKGEKSS-----N
670 680 690 700 710
730 740 750 760 770 780
pF1KB8 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EERKMNDSLEDMFDRTTHEEYESCLADSFSQAADEEEELSTATKKLHTHGDKQDKVKQKA
720 730 740 750 760 770
790 800 810 820 830 840
pF1KB8 FVEPYFKGDERETSLQNFPHIEVVRKKEERRKLLGHTCKECEIYYADMPAEEREKKLASC
:::::::::: :. ... ..:.:.:. :
CCDS11 FVEPYFKGDE---SI-----MQICQQKKEKRNWLPAQDTDSATFHPTHQRIFGKLVFLPL
780 790 800 810 820
850 860 870 880 890 900
pF1KB8 SRHRFRYIPPNTPENFWEVGFPSTQTCMERGYIKEDLDPCPRPKRRQPYNAIFSPKGKEQ
CCDS11 RLVWKEVILRKILILVLVQKDVSLTTQYFLQKARSRRHRR
830 840 850 860
>>CCDS13498.1 RBBP8NL gene_id:140893|Hs108|chr20 (664 aa)
initn: 489 init1: 441 opt: 455 Z-score: 351.7 bits: 75.9 E(32554): 2.9e-13
Smith-Waterman score: 462; 27.8% identity (51.8% similar) in 569 aa overlap (20-553:4-546)
10 20 30 40 50 60
pF1KB8 MNISGSSCGSPNSADTSSDFKDLWTKLKECHDREVQGLQVKVTKLKQERILDAQRLEEFF
: . ..::: :..:: ::: :. .:..:: ::::.::.:
CCDS13 MESFMESLNRLKEIHEKEVLGLQNKLLELNSERCRDAQRIEELF
10 20 30 40
70 80 90 100 110 120
pF1KB8 TKNQQLREQQKVLHETIKVLEDRLRAGLCDRCAVTEEHMRKKQQEFENIRQQNLKLITEL
.::.:::::::.:.:...:::.:::::::::: ::.: ::.:::::. . :::. : :
CCDS13 SKNHQLREQQKTLKENLRVLENRLRAGLCDRCMVTQELARKRQQEFESSHLQNLQRIFIL
50 60 70 80 90 100
130 140 150 160 170
pF1KB8 MNERNTLQEENKKLSEQLQQ-KIENDQQHQAAELECEEDVIPDSPITAFSFSGVNRLRRK
:: : :.:::. :.:.... . .:. . :. : : : ::. : .: . . .:
CCDS13 TNEMNGLKEENETLKEEVKRLRGLGDRPKPRAK-EGTSD--PPSPLLLPSPGGWKAITEK
110 120 130 140 150 160
180 190 200 210 220
pF1KB8 ENPHVRYIEQTHTKL----EHSVCANEMRKVSKSST------------HPQHNPNENEIL
. :. : . :.. ... :.: : ::. :. .
CCDS13 PPGGHEEAEEDHQGVGLRGEEKPAGHRTSPVAKISPGATLPESRAPDMSPQRISNQLHGT
170 180 190 200 210 220
230 240 250 260 270
pF1KB8 VADTYDQSQS-PMAK--AHGTSSYTPDKSS-----FNLATVVAETLGLGVQEESETQGP-
.: . ::. : . :.:: : .:: .. . . : . ..:
CCDS13 IAVVRPGSQACPADRGPANGTPPPLPARSSPPSPAYERGLSLDSFLRASRPSAMTHEAPK
230 240 250 260 270 280
280 290 300 310 320
pF1KB8 MSPLGDELYHCLEGN----HKKQPFEE--STRNTEDSLRFSDSTSKTPPQEELPTRVSSP
.:: :.: :: . : ..: . . .. :..: .. : ::..
CCDS13 LSPKVDRL--CLLNRPLSLHLQSPHSSPLAPAAAPSDPRLQDLKAREAEAWEEPTEL---
290 300 310 320 330
330 340 350 360 370 380
pF1KB8 VFGATSSIKSGLDLNTSLSPSLLQPGKKKHLKTLPFSNTCISRLEKTRSKSEDSALFTHH
.: :.. . :: . :: ...:.. ... : . : .. :
CCDS13 -LGLPSALAGMQDLRLEGALHLLL--AQQQLRARARAGSVRPRGQPTPGEMLPSLPVGSD
340 350 360 370 380 390
390 400 410 420 430 440
pF1KB8 SLGSEVNKIIIQSSNKQILINKNISESL-GEQNRTEYG--KDSNTDKHLEPLKSLGGRTS
: : : . . . ... . . :. .::: . .: :: :. : ::.
CCDS13 SEGPENEGTRAALAAAGLSGGRHTQPAGPGRAQRTEAAATQDCALDKPLD--LSEWGRAR
400 410 420 430 440 450
450 460 470 480 490 500
pF1KB8 KRKKTEEESEHEVSCPQASFDKENAFPFPMDNQFSMNGDCVMYKPLDLSDRFSAIQRQEK
. . ..: : :. ..: : : ...: . .: ::. .. . :.
CCDS13 GQDTPKPAGQHGSLSPAAA---HTASPEPP----TQSGP-LTRSPQALSNGTKGTRVPEQ
460 470 480 490 500
510 520 530 540 550 560
pF1KB8 SQGSETSKNKFRQVTLYEALKTIPKGFSSSRKASDGNCTLPKDSPGEPCSQECIILQPLN
..: : . : . . . : .: . : . :: : :
CCDS13 EEAS-TPMDPSRPLPGSQLSLSSP----GSTEDEDTGRPLPPPHPQPPPHPQPPDLDGHP
510 520 530 540 550
570 580 590 600 610 620
pF1KB8 KCSPDNKPSLQIKEENAVFKIPLRPRESLETENVLDDIKSAGSHEPIKIQTRSDHGGCEL
CCDS13 EPSKAEVLRPESDELDETDTPGSEVGLSSQAEATTSTTGEGPECICTQEHGQGPPRKRKR
560 570 580 590 600 610
902 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 00:14:54 2016 done: Mon Nov 7 00:14:54 2016
Total Scan time: 3.200 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]