Result of FASTA (omim) for
pFN21AB8542
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8542, 900 aa
1>>>pF1KB8542 900 - 900 aa - 900 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0066+/-0.000366; mu= 18.2370+/- 0.023
mean_var=93.0297+/-18.942, 0's: 0 Z-trim(115.3): 44 B-trim: 0 in 0/55
Lambda= 0.132973
statistics sampled from 25622 (25664) to 25622 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.661), E-opt: 0.2 (0.301), width: 16
Scan time: 14.050
The best scores are: opt bits E(85289)
NP_004981 (OMIM: 156560,615486,616280) methionine- ( 900) 6092 1179.5 0
XP_006719461 (OMIM: 156560,615486,616280) PREDICTE ( 666) 4530 879.8 0
NP_612404 (OMIM: 609728,611390,616430) methionine- ( 593) 205 50.1 3.9e-05
>>NP_004981 (OMIM: 156560,615486,616280) methionine--tRN (900 aa)
initn: 6092 init1: 6092 opt: 6092 Z-score: 6314.2 bits: 1179.5 E(85289): 0
Smith-Waterman score: 6092; 100.0% identity (100.0% similar) in 900 aa overlap (1-900:1-900)
10 20 30 40 50 60
pF1KB8 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MRLFVSDGVPGCLPVLAAAGRARGRAEVLISTVGPEDCVVPFLTRPKVPVLQLDSGNYLF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 STSAICRYFFLLSGWEQDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSVRRA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYLPEELSALHSWFQTLSTQE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 PCQRAAETVLKQQGVLALRPYLQKQPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 EKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 RQWNTLYLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTP
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB8 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 CGKLINAVELKKPQCKVCRSCPVVQSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQF
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB8 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ITRSWLRDGLKPRCITRDLKWGTPVPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWW
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB8 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 KNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGV
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB8 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 GVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMF
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB8 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VSKFFGGYVPEMVLTPDDQRLLAHVTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQ
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB8 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 VNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSI
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB8 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LLTNFLCTLPAGHQIGTVSPLFQKLENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQ
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB8 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 QIQALMDEVTKQGNIVRELKAQKADKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
850 860 870 880 890 900
>>XP_006719461 (OMIM: 156560,615486,616280) PREDICTED: m (666 aa)
initn: 4530 init1: 4530 opt: 4530 Z-score: 4696.6 bits: 879.8 E(85289): 0
Smith-Waterman score: 4530; 100.0% identity (100.0% similar) in 666 aa overlap (235-900:1-666)
210 220 230 240 250 260
pF1KB8 QPQPSPAEGRAVTNEPEEEELATLSEEEIAMAVTAWEKGLESLPPLRPQQNPVLPVAGER
::::::::::::::::::::::::::::::
XP_006 MAVTAWEKGLESLPPLRPQQNPVLPVAGER
10 20 30
270 280 290 300 310 320
pF1KB8 NVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKALE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 NVLITSALPYVNNVPHLGNIIGCVLSADVFARYSRLRQWNTLYLCGTDEYGTATETKALE
40 50 60 70 80 90
330 340 350 360 370 380
pF1KB8 EGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EGLTPQEICDKYHIIHADIYRWFNISFDIFGRTTTPQQTKITQDIFQQLLKRGFVLQDTV
100 110 120 130 140 150
390 400 410 420 430 440
pF1KB8 EQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EQLRCEHCARFLADRFVEGVCPFCGYEEARGDQCDKCGKLINAVELKKPQCKVCRSCPVV
160 170 180 190 200 210
450 460 470 480 490 500
pF1KB8 QSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDLKWGTP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 QSSQHLFLDLPKLEKRLEEWLGRTLPGSDWTPNAQFITRSWLRDGLKPRCITRDLKWGTP
220 230 240 250 260 270
510 520 530 540 550 560
pF1KB8 VPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VPLEGFEDKVFYVWFDATIGYLSITANYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVF
280 290 300 310 320 330
570 580 590 600 610 620
pF1KB8 PCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 PCSALGAEDNYTLVSHLIATEYLNYEDGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYI
340 350 360 370 380 390
630 640 650 660 670 680
pF1KB8 RPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSKFFGGYVPEMVLTPDDQRLLAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RPEGQDSAFSWTDLLLKNNSELLNNLGNFINRAGMFVSKFFGGYVPEMVLTPDDQRLLAH
400 410 420 430 440 450
690 700 710 720 730 740
pF1KB8 VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VTLELQHYHQLLEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGL
460 470 480 490 500 510
750 760 770 780 790 800
pF1KB8 AVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCTLPAGHQIGTVSPLFQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 AVNIAALLSVMLQPYMPTVSATIQAQLQLPPPACSILLTNFLCTLPAGHQIGTVSPLFQK
520 530 540 550 560 570
810 820 830 840 850 860
pF1KB8 LENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 LENDQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKA
580 590 600 610 620 630
870 880 890 900
pF1KB8 DKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
::::::::::::::::::::::::::::::::::::
XP_006 DKNEVAAEVAKLLDLKKQLAVAEGKPPEAPKGKKKK
640 650 660
>>NP_612404 (OMIM: 609728,611390,616430) methionine--tRN (593 aa)
initn: 445 init1: 137 opt: 205 Z-score: 213.2 bits: 50.1 E(85289): 3.9e-05
Smith-Waterman score: 493; 24.8% identity (51.7% similar) in 572 aa overlap (269-809:48-584)
240 250 260 270 280 290
pF1KB8 AWEKGLESLPPLRPQQNPVLPVAGERNVLITSALPYVNNVPHLGNIIGCVLSADVFARYS
:. . ::: .::.:.. . .: ::.. :.
NP_612 LSLLEDFGPRYYSSGSLSAGDDACDVRAYFTTPIFYVNAAPHIGHLYSALL-ADALCRHR
20 30 40 50 60 70
300 310 320 330 340 350
pF1KB8 RLRQWNTL---YLCGTDEYGTATETKALEEGLTPQEICDKYHIIHADIYRWFNISFDIFG
::: .: . ::::.: . : ::.: :.::. .... .:: :
NP_612 RLRGPSTAATRFSTGTDEHGLKIQQAAATAGLAPTELCDRVSEQFQQLFQEAGISCTDFI
80 90 100 110 120 130
360 370 380 390 400 410
pF1KB8 RTTTPQQTKITQDIFQQLLKRGFVLQDTVEQLRCEHCARFLADRFVEGVCPFCGYEEARG
::: .. .: .. : .::.. . . : : :: : . :
NP_612 RTTEARHRVAVQHFWGVLKSRGLLYKGVYEGWYCASDECFL---------PEAKVTQQPG
140 150 160 170 180
420 430 440 450 460 470
pF1KB8 DQCDKCGKLINAVELKKPQCKVCRSCPVVQSSQHLFL-DLPKLEKRLEEWLGRTLPGSDW
. :. : :.. . :: .... .. : ...: :..:: : : .
NP_612 PSGDSF-----PVSLESGH-------PVSWTKEENYIFRLSQFRKPLQRWL-RGNPQA-I
190 200 210 220 230
480 490 500 510 520 530
pF1KB8 TPNA-QFITRSWLRDGLKPRCITR---DLKWGTPVPLEGFEDKVFYVWFDATIGYLSITA
::. . .. .:: . : ..: :.:: ::: : .....:::.:: ..::.. .
NP_612 TPEPFHHVVLQWLDEELPDLSVSRRSSHLHWGIPVP--GDDSQTIYVWLDALVNYLTVIG
240 250 260 270 280 290
540 550 560 570 580 590
pF1KB8 NYTDQWERWWKNPEQVDLYQFMAKDNVPFHSLVFPCSALGAEDNYTLVSHLIATEYLNYE
. ... :: .. ..:: . ::.. .: ::: ... ... . . .
NP_612 YPNAEFKSWWPATSHI-----IGKDILKFHAIYWPAFLLGA--GMSPPQRICVHSHWTVC
300 310 320 330 340
600 610 620 630 640 650
pF1KB8 DGKFSKSRGVGVFGDMAQDTGIPADIWRFYLLYIRPEGQDSAFSWTDLLLKNNSELLNNL
:.::: : .: . . .: .:..:: . : . .. :::: . :
NP_612 GQKMSKSLG-NVVDPRTCLNRYTVDGFRYFLLRQGVPNWDCDYYDEKVVKLLNSELADAL
350 360 370 380 390 400
660 670 680 690
pF1KB8 GNFINRAGM-----------FVSKFFG---GYV-PEMVLTPDDQRLLAHVTLELQHYHQL
:...:: : . : : : : . .: :.. :. .. .
NP_612 GGLLNRCTAKRINPSETYPAFCTTCFPSEPGLVGPSVRAQAEDYALVSAVATLPKQVADH
410 420 430 440 450 460
700 710 720 730 740 750
pF1KB8 LEKVRIRDALRSILTISRHGNQYIQVNEPWKRIKGSEADRQRAGTVTGLAVNIAALLSVM
.. :: ::... . :. : ..: . ::: : .: ::: .:.. .....
NP_612 YDNFRIYKALEAVSSCVRQTNGFVQRHAPWKLNWESPVDAPWLGTVLHVALECLRVFGTL
470 480 490 500 510 520
760 770 780 790 800
pF1KB8 LQPYMPTVSATIQAQLQLPPPACSILLTNFL-------CTLPAGHQIGTVSPL-FQKLEN
::: :... . ..: . :. :: : . :...: . : : .:..
NP_612 LQPVTPSLADKLLSRLGVSASERSLGELYFLPRFYGHPCPFE-GRRLGPETGLLFPRLDQ
530 540 550 560 570 580
810 820 830 840 850 860
pF1KB8 DQIESLRQRFGGGQAKTSPKPAVVETVTTAKPQQIQALMDEVTKQGNIVRELKAQKADKN
..
NP_612 SRTWLVKAHRT
590
900 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 14:48:21 2016 done: Sun Nov 6 14:48:23 2016
Total Scan time: 14.050 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]