Result of FASTA (ccds) for
pFN21AB8350
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8350, 266 aa
1>>>pF1KB8350 266 - 266 aa - 266 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1676+/-0.000912; mu= 7.8053+/- 0.054
mean_var=221.9222+/-46.411, 0's: 0 Z-trim(113.7): 841 B-trim: 0 in 0/53
Lambda= 0.086094
statistics sampled from 13322 (14294) to 13322 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.439), width: 16
Scan time: 2.690
The best scores are: opt bits E(32554)
CCDS1694.1 OSR1 gene_id:130497|Hs108|chr2 ( 266) 1856 242.7 2e-64
CCDS47902.1 OSR2 gene_id:116039|Hs108|chr8 ( 276) 1230 165.0 5.2e-41
CCDS47901.1 OSR2 gene_id:116039|Hs108|chr8 ( 312) 1224 164.3 9.3e-41
CCDS69520.1 OSR2 gene_id:116039|Hs108|chr8 ( 433) 1224 164.5 1.1e-40
>>CCDS1694.1 OSR1 gene_id:130497|Hs108|chr2 (266 aa)
initn: 1856 init1: 1856 opt: 1856 Z-score: 1270.2 bits: 242.7 E(32554): 2e-64
Smith-Waterman score: 1856; 100.0% identity (100.0% similar) in 266 aa overlap (1-266:1-266)
10 20 30 40 50 60
pF1KB8 MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 AMHLPRSSFSKVPGTVSSLVDARFQLPAFPWFPHVIQPKPEITAGGSVPALKTKPRFDFA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 AMHLPRSSFSKVPGTVSSLVDARFQLPAFPWFPHVIQPKPEITAGGSVPALKTKPRFDFA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 NLALAATQEDPAKLGRGEGPGSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKEFVCKFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 NLALAATQEDPAKLGRGEGPGSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKEFVCKFC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS16 GRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGF
190 200 210 220 230 240
250 260
pF1KB8 CQSRTLAVHKTLHSQVKELKTSKIKC
::::::::::::::::::::::::::
CCDS16 CQSRTLAVHKTLHSQVKELKTSKIKC
250 260
>>CCDS47902.1 OSR2 gene_id:116039|Hs108|chr8 (276 aa)
initn: 1230 init1: 711 opt: 1230 Z-score: 849.8 bits: 165.0 E(32554): 5.2e-41
Smith-Waterman score: 1230; 66.8% identity (84.3% similar) in 274 aa overlap (1-266:1-265)
10 20 30 40 50 60
pF1KB8 MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYP
::::.::::.:.:::::::::::::::: .:.. ::: .:::.::....:...::::::
CCDS47 MGSKALPAPIPLHPSLQLTNYSFLQAVNTFPAT-VDHLQGLYGLSAVQTMHMNHWTLGYP
10 20 30 40 50
70 80 90 100 110
pF1KB8 AMH-LPRSSFSKVPGTVSSLVDARFQLPAFPWFPHVIQPKPEITAGGSVPAL-KTKPRFD
.: . ::..... .....:::::: .::.:. :...:: : .::: : .::::
CCDS47 NVHEITRSTITEM-AAAQGLVDARFPFPALPFTTHLFHPKQGAIAH-VLPALHKDRPRFD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FANLALAATQEDPAKLGR----GEGPGSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKE
:::::.::::::: :.: . : ::: .:: .::.:..::.:::::::::::
CCDS47 FANLAVAATQEDPPKMGDLSKLSPGLGSPISGL------SKLTPDRKPSRGRLPSKTKKE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 FVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ
180 190 200 210 220 230
240 250 260
pF1KB8 ECGKGFCQSRTLAVHKTLHSQVKE--LKTSKIKC
::::::::::::::::::: :.. .: ::
CCDS47 ECGKGFCQSRTLAVHKTLHMQTSSPTAASSAAKCSGETVICGGTA
240 250 260 270
>>CCDS47901.1 OSR2 gene_id:116039|Hs108|chr8 (312 aa)
initn: 1230 init1: 711 opt: 1224 Z-score: 845.2 bits: 164.3 E(32554): 9.3e-41
Smith-Waterman score: 1224; 69.0% identity (86.2% similar) in 261 aa overlap (1-255:1-252)
10 20 30 40 50 60
pF1KB8 MGSKTLPAPVPIHPSLQLTNYSFLQAVNGLPTVPSDHLPNLYGFSALHAVHLHQWTLGYP
::::.::::.:.:::::::::::::::: .:.. ::: .:::.::....:...::::::
CCDS47 MGSKALPAPIPLHPSLQLTNYSFLQAVNTFPAT-VDHLQGLYGLSAVQTMHMNHWTLGYP
10 20 30 40 50
70 80 90 100 110
pF1KB8 AMH-LPRSSFSKVPGTVSSLVDARFQLPAFPWFPHVIQPKPEITAGGSVPAL-KTKPRFD
.: . ::..... .....:::::: .::.:. :...:: : .::: : .::::
CCDS47 NVHEITRSTITEM-AAAQGLVDARFPFPALPFTTHLFHPKQGAIAH-VLPALHKDRPRFD
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 FANLALAATQEDPAKLGR----GEGPGSPAGGLGALLDVTKLSPEKKPTRGRLPSKTKKE
:::::.::::::: :.: . : ::: .:: .::.:..::.:::::::::::
CCDS47 FANLAVAATQEDPPKMGDLSKLSPGLGSPISGL------SKLTPDRKPSRGRLPSKTKKE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 FVCKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ
:.::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 FICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQ
180 190 200 210 220 230
240 250 260
pF1KB8 ECGKGFCQSRTLAVHKTLHSQVKELKTSKIKC
::::::::::::::::::: :
CCDS47 ECGKGFCQSRTLAVHKTLHMQESPHKCPTCGRTFNQRSNLKTHLLTHTDIKPYSCEQCGK
240 250 260 270 280 290
>>CCDS69520.1 OSR2 gene_id:116039|Hs108|chr8 (433 aa)
initn: 1230 init1: 711 opt: 1224 Z-score: 843.6 bits: 164.5 E(32554): 1.1e-40
Smith-Waterman score: 1224; 69.0% identity (86.2% similar) in 261 aa overlap (1-255:122-373)
10 20 30
pF1KB8 MGSKTLPAPVPIHPSLQLTNYSFLQAVNGL
::::.::::.:.:::::::::::::::: .
CCDS69 HWVFVGAPRPPASDSWKKGLVPSAPPASRKMGSKALPAPIPLHPSLQLTNYSFLQAVNTF
100 110 120 130 140 150
40 50 60 70 80
pF1KB8 PTVPSDHLPNLYGFSALHAVHLHQWTLGYPAMH-LPRSSFSKVPGTVSSLVDARFQLPAF
:.. ::: .:::.::....:...:::::: .: . ::..... .....:::::: .::.
CCDS69 PAT-VDHLQGLYGLSAVQTMHMNHWTLGYPNVHEITRSTITEM-AAAQGLVDARFPFPAL
160 170 180 190 200
90 100 110 120 130 140
pF1KB8 PWFPHVIQPKPEITAGGSVPAL-KTKPRFDFANLALAATQEDPAKLGR----GEGPGSPA
:. :...:: : .::: : .:::::::::.::::::: :.: . : :::
CCDS69 PFTTHLFHPKQGAIAH-VLPALHKDRPRFDFANLAVAATQEDPPKMGDLSKLSPGLGSPI
210 220 230 240 250 260
150 160 170 180 190 200
pF1KB8 GGLGALLDVTKLSPEKKPTRGRLPSKTKKEFVCKFCGRHFTKSYNLLIHERTHTDERPYT
.:: .::.:..::.::::::::::::.::::::::::::::::::::::::::::
CCDS69 SGL------SKLTPDRKPSRGRLPSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYT
270 280 290 300 310 320
210 220 230 240 250 260
pF1KB8 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHSQVKELKTSKI
::::::::::::::::::::::::::::::::::::::::::::::::: :
CCDS69 CDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQESPHKCPTC
330 340 350 360 370 380
pF1KB8 KC
CCDS69 GRTFNQRSNLKTHLLTHTDIKPYSCEQCGKVFRRNCDLRRHSLTHTPRQDF
390 400 410 420 430
266 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 21:26:45 2016 done: Sun Nov 6 21:26:45 2016
Total Scan time: 2.690 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]