Result of FASTA (omim) for
pFN21AB8330
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8330, 137 aa
1>>>pF1KB8330 137 - 137 aa - 137 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1469+/-0.000249; mu= 9.0381+/- 0.016
mean_var=107.6283+/-20.927, 0's: 0 Z-trim(124.2): 7 B-trim: 0 in 0/56
Lambda= 0.123626
statistics sampled from 45340 (45350) to 45340 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.845), E-opt: 0.2 (0.532), width: 16
Scan time: 4.550
The best scores are: opt bits E(85289)
XP_006722005 (OMIM: 180073,268000,613582) PREDICTE ( 137) 963 180.7 6.5e-46
XP_016880223 (OMIM: 180073,268000,613582) PREDICTE ( 157) 738 140.6 8.6e-34
XP_016880224 (OMIM: 180073,268000,613582) PREDICTE ( 87) 612 117.9 3.2e-27
XP_016880225 (OMIM: 180073,268000,613582) PREDICTE ( 87) 612 117.9 3.2e-27
NP_002593 (OMIM: 180073,268000,613582) retinal rod ( 87) 612 117.9 3.2e-27
NP_006196 (OMIM: 601190,610024) retinal cone rhodo ( 83) 475 93.5 7e-20
XP_016874920 (OMIM: 601190,610024) PREDICTED: reti ( 83) 475 93.5 7e-20
>>XP_006722005 (OMIM: 180073,268000,613582) PREDICTED: r (137 aa)
initn: 963 init1: 963 opt: 963 Z-score: 945.3 bits: 180.7 E(85289): 6.5e-46
Smith-Waterman score: 963; 100.0% identity (100.0% similar) in 137 aa overlap (1-137:1-137)
10 20 30 40 50 60
pF1KB8 MKQRDKGRGWHPAEGGPALTAQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKQRDKGRGWHPAEGGPALTAQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 RSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPW
70 80 90 100 110 120
130
pF1KB8 EAFNHLELHELAQYGII
:::::::::::::::::
XP_006 EAFNHLELHELAQYGII
130
>>XP_016880223 (OMIM: 180073,268000,613582) PREDICTED: r (157 aa)
initn: 737 init1: 737 opt: 738 Z-score: 727.6 bits: 140.6 E(85289): 8.6e-34
Smith-Waterman score: 738; 84.8% identity (87.9% similar) in 132 aa overlap (11-137:26-157)
10 20 30 40
pF1KB8 MKQRDKGRGWHPAEGGPALTAQPPETRPAL-----DRSRRESRSQ
.: . :.: : : : .:::::::::
XP_016 MWDLQPYVVLPAHLRCNLQLPYYLRQPEPVNEFLSAGRPCRRTFLSKNSRNRSRRESRSQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 GCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQGF
70 80 90 100 110 120
110 120 130
pF1KB8 GDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::::::::::::::
XP_016 GDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
130 140 150
>>XP_016880224 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa)
initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87)
30 40 50 60 70 80
pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF
::::::::::::::::::::::::::::::
XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF
10 20 30
90 100 110 120 130
pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
40 50 60 70 80
>>XP_016880225 (OMIM: 180073,268000,613582) PREDICTED: r (87 aa)
initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87)
30 40 50 60 70 80
pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF
::::::::::::::::::::::::::::::
XP_016 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF
10 20 30
90 100 110 120 130
pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
40 50 60 70 80
>>NP_002593 (OMIM: 180073,268000,613582) retinal rod rho (87 aa)
initn: 612 init1: 612 opt: 612 Z-score: 609.7 bits: 117.9 E(85289): 3.2e-27
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87)
30 40 50 60 70 80
pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF
::::::::::::::::::::::::::::::
NP_002 MNLEPPKAEFRSATRVAGGPVTPRKGPPKF
10 20 30
90 100 110 120 130
pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
40 50 60 70 80
>>NP_006196 (OMIM: 601190,610024) retinal cone rhodopsin (83 aa)
initn: 475 init1: 475 opt: 475 Z-score: 477.9 bits: 93.5 E(85289): 7e-20
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83)
40 50 60 70 80 90
pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ
::.::::::::::::::::::::::::::.
NP_006 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK
10 20 30 40
100 110 120 130
pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::.:::::::::.:::
NP_006 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII
50 60 70 80
>>XP_016874920 (OMIM: 601190,610024) PREDICTED: retinal (83 aa)
initn: 475 init1: 475 opt: 475 Z-score: 477.9 bits: 93.5 E(85289): 7e-20
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83)
40 50 60 70 80 90
pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ
::.::::::::::::::::::::::::::.
XP_016 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK
10 20 30 40
100 110 120 130
pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
:::::::::::::::::::::::::.:::::::::.:::
XP_016 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII
50 60 70 80
137 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:39:05 2016 done: Mon Nov 7 04:39:06 2016
Total Scan time: 4.550 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]