FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8330, 137 aa
  1>>>pF1KB8330 137 - 137 aa - 137 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.1144+/-0.00056; mu= 9.3321+/- 0.034
 mean_var=104.9365+/-20.563, 0's: 0 Z-trim(116.9): 3  B-trim: 0 in 0/54
 Lambda= 0.125202
 statistics sampled from 17513 (17516) to 17513 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.848), E-opt: 0.2 (0.538), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17         (  87)  612 119.2 5.1e-28
CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12          (  83)  475 94.4 1.4e-20


>>CCDS11783.1 PDE6G gene_id:5148|Hs108|chr17              (87 aa)
 initn: 612 init1: 612 opt: 612  Z-score: 616.5  bits: 119.2 E(32554): 5.1e-28
Smith-Waterman score: 612; 100.0% identity (100.0% similar) in 87 aa overlap (51-137:1-87)

               30        40        50        60        70        80
pF1KB8 AQPPETRPALDRSRRESRSQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKF
                                     ::::::::::::::::::::::::::::::
CCDS11                               MNLEPPKAEFRSATRVAGGPVTPRKGPPKF
                                             10        20        30

               90       100       110       120       130       
pF1KB8 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 KQRQTRQFKSKPPKKGVQGFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
               40        50        60        70        80       

>>CCDS8672.1 PDE6H gene_id:5149|Hs108|chr12               (83 aa)
 initn: 475 init1: 475 opt: 475  Z-score: 483.0  bits: 94.4 E(32554): 1.4e-20
Smith-Waterman score: 475; 94.2% identity (100.0% similar) in 69 aa overlap (69-137:15-83)

       40        50        60        70        80        90        
pF1KB8 SQGCRGVSVSLTMNLEPPKAEFRSATRVAGGPVTPRKGPPKFKQRQTRQFKSKPPKKGVQ
                                     ::.::::::::::::::::::::::::::.
CCDS86                 MSDNTTLPAPASNQGPTTPRKGPPKFKQRQTRQFKSKPPKKGVK
                               10        20        30        40    

      100       110       120       130       
pF1KB8 GFGDDIPGMEGLGTDITVICPWEAFNHLELHELAQYGII
       :::::::::::::::::::::::::.:::::::::.:::
CCDS86 GFGDDIPGMEGLGTDITVICPWEAFSHLELHELAQFGII
           50        60        70        80   




137 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:39:05 2016 done: Mon Nov  7 04:39:05 2016
 Total Scan time:  1.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]