Result of FASTA (ccds) for
pFN21AB8316
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8316, 423 aa
1>>>pF1KB8316 423 - 423 aa - 423 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.6841+/-0.000848; mu= 2.9503+/- 0.051
mean_var=194.8874+/-39.389, 0's: 0 Z-trim(113.7): 22 B-trim: 0 in 0/52
Lambda= 0.091872
statistics sampled from 14302 (14319) to 14302 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.773), E-opt: 0.2 (0.44), width: 16
Scan time: 3.450
The best scores are: opt bits E(32554)
CCDS48179.1 HSFX2 gene_id:100130086|Hs108|chrX ( 423) 2940 401.8 6.5e-112
CCDS44011.1 HSFX1 gene_id:100506164|Hs108|chrX ( 423) 2940 401.8 6.5e-112
CCDS35475.1 HSFY1 gene_id:86614|Hs108|chrY ( 401) 513 80.1 4.3e-15
CCDS14791.1 HSFY2 gene_id:159119|Hs108|chrY ( 401) 513 80.1 4.3e-15
>>CCDS48179.1 HSFX2 gene_id:100130086|Hs108|chrX (423 aa)
initn: 2940 init1: 2940 opt: 2940 Z-score: 2122.7 bits: 401.8 E(32554): 6.5e-112
Smith-Waterman score: 2940; 99.8% identity (99.8% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KB8 MEDKRSLSMARCEERNSRGQDHGLERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 MEDKRSLSMARCEERNSRGQDHGLERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLTEEIAFQPLAEEASFRRPHPDGDVPPQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 LLTEEIAFQPLAEEASFRRPHPDGDVPPQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GACRVINQKLFEKEILKRDVAHKVFATTSIKSFFRQLNLYGFRKRRQCTFRTFTRIFSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GACRVINQKLFEKEILKRDVAHKVFATTSIKSFFRQLNLYGFRKRRQCTFRTFTRIFSAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RLVSILNKLEFYCHPYFQRDSPHLLVRMKRRVGVKSAPRHQEEDKPEAAGSCLAPADTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 RLVSILNKLEFYCHPYFQRDSPHLLVRMKRRVGVKSAPRHQEEDKPEAAGSCLAPADTEQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QDHTSPNENDQVTPQHREPAGPNTQIRSGSAPPATPVMVPDSAVASDNSPVTQPAGEWSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 QDHTSPNENDQVTPQHREPAGPNTQIRSGSAPPATPVMVPDSAVASDNSPVTQPAGEWSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GSQAHVTPVAAVPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTGLPAPGML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS48 GSQAHVTPVAAVPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTGLPAPGML
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHCTSQYMPASDGPQAYPDYAD
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS48 PFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHRTSQYMPASDGPQAYPDYAD
370 380 390 400 410 420
pF1KB8 QST
:::
CCDS48 QST
>>CCDS44011.1 HSFX1 gene_id:100506164|Hs108|chrX (423 aa)
initn: 2940 init1: 2940 opt: 2940 Z-score: 2122.7 bits: 401.8 E(32554): 6.5e-112
Smith-Waterman score: 2940; 99.8% identity (99.8% similar) in 423 aa overlap (1-423:1-423)
10 20 30 40 50 60
pF1KB8 MEDKRSLSMARCEERNSRGQDHGLERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MEDKRSLSMARCEERNSRGQDHGLERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LLTEEIAFQPLAEEASFRRPHPDGDVPPQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LLTEEIAFQPLAEEASFRRPHPDGDVPPQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDS
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 GACRVINQKLFEKEILKRDVAHKVFATTSIKSFFRQLNLYGFRKRRQCTFRTFTRIFSAK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GACRVINQKLFEKEILKRDVAHKVFATTSIKSFFRQLNLYGFRKRRQCTFRTFTRIFSAK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 RLVSILNKLEFYCHPYFQRDSPHLLVRMKRRVGVKSAPRHQEEDKPEAAGSCLAPADTEQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 RLVSILNKLEFYCHPYFQRDSPHLLVRMKRRVGVKSAPRHQEEDKPEAAGSCLAPADTEQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 QDHTSPNENDQVTPQHREPAGPNTQIRSGSAPPATPVMVPDSAVASDNSPVTQPAGEWSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 QDHTSPNENDQVTPQHREPAGPNTQIRSGSAPPATPVMVPDSAVASDNSPVTQPAGEWSE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 GSQAHVTPVAAVPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTGLPAPGML
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 GSQAHVTPVAAVPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTGLPAPGML
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB8 PFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHCTSQYMPASDGPQAYPDYAD
:::::::::::::::::::::::::::::::::::::::: :::::::::::::::::::
CCDS44 PFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHRTSQYMPASDGPQAYPDYAD
370 380 390 400 410 420
pF1KB8 QST
:::
CCDS44 QST
>>CCDS35475.1 HSFY1 gene_id:86614|Hs108|chrY (401 aa)
initn: 496 init1: 300 opt: 513 Z-score: 384.5 bits: 80.1 E(32554): 4.3e-15
Smith-Waterman score: 563; 35.2% identity (59.6% similar) in 369 aa overlap (55-395:35-397)
30 40 50 60 70 80
pF1KB8 ERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLRLLTEEIAFQPLAEEASFRRPHPDG
:. .:: . :: ::: :.. . .. :
CCDS35 SSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESPSYTV
10 20 30 40 50 60
90 100 110 120 130 140
pF1KB8 DVP-PQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDSGACRVINQKLFEKEILKRDVAHK
: :. .:..::: ::.:::..: :.::.:: ::..:.: :::..::.::::. . ..
CCDS35 CVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETKAPYR
70 80 90 100 110 120
150 160 170 180 190 200
pF1KB8 VFATTSIKSFFRQLNLYGFRKRRQCTFRT-FTRIF-SAKRLVSILNKLEFYCHPYFQRDS
.: : .:::: :::::::: : .: :. : : : .. :.:.::.:: .: :.:
CCDS35 IFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGY
130 140 150 160 170 180
210 220 230 240
pF1KB8 PHLLVRMKRRVGVKSA-PRHQ--EED---KPEAAG-------SCLAPADTEQQDHTSPNE
:.::::.:::.:::.: : .:: : :: : :: :.. ... : ..
CCDS35 PQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALA-AEASEESLFSASK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NDQVTPQHREP------AGPNTQIRSGSAPPATPVMV-PDSAVASDNSPVTQPAGEWSEG
: .. : :: :. .. :::: ::. . : :. .:.:. . . .
CCDS35 NLNM-PLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLT--TIH
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 SQAHVTPVAA----VPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTG-LPA
..: : . : : .. : :: : . .: .: :.: . . ... :
CCDS35 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVE-PSAVPTRYPLVSVNEAPY
310 320 330 340 350
360 370 380 390 400 410
pF1KB8 PGMLPFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHCTSQYMPASDGPQAYP
.::: . :. . .: .: : . ... : : ..:
CCDS35 RNMLPAGNPWLQMPTIADRSAAPHSRLALQPS-PLDKYHPNYN
360 370 380 390 400
420
pF1KB8 DYADQST
>>CCDS14791.1 HSFY2 gene_id:159119|Hs108|chrY (401 aa)
initn: 496 init1: 300 opt: 513 Z-score: 384.5 bits: 80.1 E(32554): 4.3e-15
Smith-Waterman score: 563; 35.2% identity (59.6% similar) in 369 aa overlap (55-395:35-397)
30 40 50 60 70 80
pF1KB8 ERVPFPPQLQSETYLHPADPSPAWDDPGSTGSPNLRLLTEEIAFQPLAEEASFRRPHPDG
:. .:: . :: ::: :.. . .. :
CCDS14 SSETQDVSPKDELTASEASTRSPLCEHTFPGDSDLRSMIEEHAFQVLSQGSLLESPSYTV
10 20 30 40 50 60
90 100 110 120 130 140
pF1KB8 DVP-PQGEDNLLSLPFPQKLWRLVSSNQFSSIWWDDSGACRVINQKLFEKEILKRDVAHK
: :. .:..::: ::.:::..: :.::.:: ::..:.: :::..::.::::. . ..
CCDS14 CVSEPDKDDDFLSLNFPRKLWKIVESDQFKSISWDENGTCIVINEELFKKEILETKAPYR
70 80 90 100 110 120
150 160 170 180 190 200
pF1KB8 VFATTSIKSFFRQLNLYGFRKRRQCTFRT-FTRIF-SAKRLVSILNKLEFYCHPYFQRDS
.: : .:::: :::::::: : .: :. : : : .. :.:.::.:: .: :.:
CCDS14 IFQTDAIKSFVRQLNLYGFSKIQQNFQRSAFLATFLSEEKESSVLSKLKFYYNPNFKRGY
130 140 150 160 170 180
210 220 230 240
pF1KB8 PHLLVRMKRRVGVKSA-PRHQ--EED---KPEAAG-------SCLAPADTEQQDHTSPNE
:.::::.:::.:::.: : .:: : :: : :: :.. ... : ..
CCDS14 PQLLVRVKRRIGVKNASPISTLFNEDFNKKHFRAGANMENHNSALA-AEASEESLFSASK
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 NDQVTPQHREP------AGPNTQIRSGSAPPATPVMV-PDSAVASDNSPVTQPAGEWSEG
: .. : :: :. .. :::: ::. . : :. .:.:. . . .
CCDS14 NLNM-PLTRESSVRQIIANSSVPIRSGFPPPSPSTSVGPSEQIATDQHAILNQLT--TIH
250 260 270 280 290 300
310 320 330 340 350
pF1KB8 SQAHVTPVAA----VPGPAALPFLYVPGSPTQMNSYGPVVALPTASRSTLAMDTTG-LPA
..: : . : : .. : :: : . .: .: :.: . . ... :
CCDS14 MHSHSTYMQARGHIVNFITTTTSQYHIISPLQNGYFGLTVE-PSAVPTRYPLVSVNEAPY
310 320 330 340 350
360 370 380 390 400 410
pF1KB8 PGMLPFCHLWVPVTLVAAGAAQPAASMVMFPHLPALHHHCPHSHCTSQYMPASDGPQAYP
.::: . :. . .: .: : . ... : : ..:
CCDS14 RNMLPAGNPWLQMPTIADRSAAPHSRLALQPS-PLDKYHPNYN
360 370 380 390 400
420
pF1KB8 DYADQST
423 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 04:41:25 2016 done: Mon Nov 7 04:41:26 2016
Total Scan time: 3.450 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]