FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8312, 142 aa
  1>>>pF1KB8312 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3737+/-0.000557; mu= 11.7281+/- 0.034
 mean_var=71.3882+/-14.059, 0's: 0 Z-trim(113.8): 18  B-trim: 0 in 0/53
 Lambda= 0.151796
 statistics sampled from 14351 (14367) to 14351 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.811), E-opt: 0.2 (0.441), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS11755.1 BIRC5 gene_id:332|Hs108|chr17          ( 142)  996 226.0   6e-60
CCDS32752.1 BIRC5 gene_id:332|Hs108|chr17          ( 165)  575 133.9 3.8e-32
CCDS32751.1 BIRC5 gene_id:332|Hs108|chr17          ( 137)  574 133.6 3.8e-32


>>CCDS11755.1 BIRC5 gene_id:332|Hs108|chr17               (142 aa)
 initn: 996 init1: 996 opt: 996  Z-score: 1189.8  bits: 226.0 E(32554): 6e-60
Smith-Waterman score: 996; 99.3% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
               70        80        90       100       110       120

              130       140  
pF1KB8 KKEFEETAKKVRRAIEQLAAMD
       ::::::::.:::::::::::::
CCDS11 KKEFEETAEKVRRAIEQLAAMD
              130       140  

>>CCDS32752.1 BIRC5 gene_id:332|Hs108|chr17               (165 aa)
 initn: 982 init1: 575 opt: 575  Z-score: 690.6  bits: 133.9 E(32554): 3.8e-32
Smith-Waterman score: 940; 85.5% identity (86.1% similar) in 165 aa overlap (1-142:1-165)

               10        20        30        40        50        60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
               10        20        30        40        50        60

               70                               80        90       
pF1KB8 FKELEGWEPDDDPI-----------------------EEHKKHSSGCAFLSVKKQFEELT
       ::::::::::::::                       :::::::::::::::::::::::
CCDS32 FKELEGWEPDDDPIGPGTVAYACNTSTLGGRGGRITREEHKKHSSGCAFLSVKKQFEELT
               70        80        90       100       110       120

       100       110       120       130       140  
pF1KB8 LGEFLKLDRERAKNKIAKETNNKKKEFEETAKKVRRAIEQLAAMD
       :::::::::::::::::::::::::::::::.:::::::::::::
CCDS32 LGEFLKLDRERAKNKIAKETNNKKKEFEETAEKVRRAIEQLAAMD
              130       140       150       160     

>>CCDS32751.1 BIRC5 gene_id:332|Hs108|chr17               (137 aa)
 initn: 574 init1: 574 opt: 574  Z-score: 690.6  bits: 133.6 E(32554): 3.8e-32
Smith-Waterman score: 574; 97.3% identity (100.0% similar) in 75 aa overlap (1-75:1-75)

               10        20        30        40        50        60
pF1KB8 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 FKELEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTLGEFLKLDRERAKNKIAKETNNK
       :::::::::::::..                                             
CCDS32 FKELEGWEPDDDPMQRKPTIRRKNLRKLRRKCAVPSSSWLPWIEASGRSCLVPEWLHHFQ
               70        80        90       100       110       120




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:14:39 2016 done: Mon Nov  7 04:14:39 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]