Result of FASTA (ccds) for
pFN21AB8259
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8259, 299 aa
1>>>pF1KB8259 299 - 299 aa - 299 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.1558+/-0.00087; mu= 3.5482+/- 0.052
mean_var=144.1449+/-31.606, 0's: 0 Z-trim(111.6): 18 B-trim: 657 in 1/50
Lambda= 0.106825
statistics sampled from 12476 (12493) to 12476 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.384), width: 16
Scan time: 2.540
The best scores are: opt bits E(32554)
CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 ( 299) 1981 316.3 1.8e-86
CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 ( 272) 1817 291.0 6.8e-79
CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 ( 301) 1304 211.9 4.7e-55
CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 ( 280) 1129 184.9 5.8e-47
CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 ( 348) 870 145.1 7.3e-35
>>CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 (299 aa)
initn: 1981 init1: 1981 opt: 1981 Z-score: 1665.8 bits: 316.3 E(32554): 1.8e-86
Smith-Waterman score: 1981; 100.0% identity (100.0% similar) in 299 aa overlap (1-299:1-299)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
190 200 210 220 230 240
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
250 260 270 280 290
>>CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 (272 aa)
initn: 1817 init1: 1817 opt: 1817 Z-score: 1529.8 bits: 291.0 E(32554): 6.8e-79
Smith-Waterman score: 1817; 100.0% identity (100.0% similar) in 272 aa overlap (28-299:1-272)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:::::::::::::::::::::::::::::::::
CCDS13 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30
70 80 90 100 110 120
pF1KB8 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SDEEVIALAKSLIKSWKKLLDASDAKARERGRGMPLPTSSRDASEAPDPSRKRPELPRAP
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 STPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 TDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTK
160 170 180 190 200 210
250 260 270 280 290
pF1KB8 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 EAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
220 230 240 250 260 270
>>CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 (301 aa)
initn: 1266 init1: 940 opt: 1304 Z-score: 1101.9 bits: 211.9 E(32554): 4.7e-55
Smith-Waterman score: 1304; 66.8% identity (84.4% similar) in 301 aa overlap (5-299:2-301)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:.:..:.:...:::: ::.: ::.:::.::: .:.::.::::::.::::::.::::
CCDS47 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQS
10 20 30 40 50
70 80 90 100 110
pF1KB8 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
.:::: .::::::::::::::. : : .. . : :: .:. : . .:
CCDS47 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
. : .: ...:: .: : :.:: ::::::.:::.: :..::::: :.:..:::: :
CCDS47 DETNARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
.... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
CCDS47 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
:: .:::::::::::.::::::::::::::.:::::::::::::.:::::::::::::::
CCDS47 RKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN
240 250 260 270 280 290
pF1KB8 RWKFC
:::::
CCDS47 RWKFC
300
>>CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 (280 aa)
initn: 1159 init1: 940 opt: 1129 Z-score: 956.6 bits: 184.9 E(32554): 5.8e-47
Smith-Waterman score: 1159; 62.1% identity (78.1% similar) in 301 aa overlap (5-299:2-280)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:.:..:.:...:::: ::.: :::.::::::.::::
CCDS47 MEDEVVRFAKKMDKMVQKKNA---------------------STRIGMSVNAIRKQS
10 20 30
70 80 90 100 110
pF1KB8 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
.:::: .::::::::::::::. : : .. . : :: .:. : . .:
CCDS47 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB8 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
. : .: ...:: .: : :.:: ::::::.:::.: :..::::: :.:..:::: :
CCDS47 DETNARDT-YVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB8 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
.... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
CCDS47 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB8 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
:: .:::::::::::.::::::::::::::.:::::::::::::.:::::::::::::::
CCDS47 RKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN
220 230 240 250 260 270
pF1KB8 RWKFC
:::::
CCDS47 RWKFC
280
>>CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 (348 aa)
initn: 1188 init1: 823 opt: 870 Z-score: 739.4 bits: 145.1 E(32554): 7.3e-35
Smith-Waterman score: 1048; 50.8% identity (73.4% similar) in 331 aa overlap (19-299:18-348)
10 20 30 40 50 60
pF1KB8 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
:..:..:::.:::..:.. ....:::.::.:..::..::.
CCDS44 MGQEEELLRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHC
10 20 30 40 50
70 80 90
pF1KB8 SDEEVIALAKSLIKSWKKLLDASD------------AKARERG---------RGMPLPTS
::.::..::: :::.::.:::. :: .:.: :. : .
CCDS44 SDKEVVSLAKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRK
60 70 80 90 100 110
100 110 120 130
pF1KB8 SRD--------------ASEAP--------DPSRKRPELPRAPSTPRITTFP-------P
.:. :: .: . :... : :..::.: :: :
CCDS44 KREDPKTRRDSVDSKSSASSSPKRPSVERSNSSKSKAESPKTPSSPLTPTFASSMCLLAP
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB8 VPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVR
.: :.::.:: :::.:::..: :. :..:......::. :.... .:::::.::::
CCDS44 CYLTGDSVRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVR
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB8 SRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMAR
:::::::: .:: :::::: :::. :: ::.::::::::.:.:.:::.:::::::::.
CCDS44 SRISNLKDPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAK
240 250 260 270 280 290
260 270 280 290
pF1KB8 TGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
:::: :::: :.::.::::::.::::::.::::::::.:::::::::::
CCDS44 TGGTTTDLFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
300 310 320 330 340
299 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 14:30:11 2016 done: Mon Nov 7 14:30:11 2016
Total Scan time: 2.540 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]