FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8241, 464 aa
  1>>>pF1KB8241 464 - 464 aa - 464 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2752+/-0.000788; mu= 17.7180+/- 0.047
 mean_var=65.6361+/-13.161, 0's: 0 Z-trim(107.8): 11  B-trim: 78 in 1/47
 Lambda= 0.158308
 statistics sampled from 9770 (9774) to 9770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.3), width:  16
 Scan time:  3.120

The best scores are:                                      opt bits E(32554)
CCDS8173.1 NDUFV1 gene_id:4723|Hs108|chr11         ( 464) 3184 736.0 1.9e-212
CCDS53669.1 NDUFV1 gene_id:4723|Hs108|chr11        ( 455) 3027 700.2 1.2e-201


>>CCDS8173.1 NDUFV1 gene_id:4723|Hs108|chr11              (464 aa)
 initn: 3184 init1: 3184 opt: 3184  Z-score: 3927.6  bits: 736.0 E(32554): 1.9e-212
Smith-Waterman score: 3184; 100.0% identity (100.0% similar) in 464 aa overlap (1-464:1-464)

               10        20        30        40        50        60
pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
              370       380       390       400       410       420

              430       440       450       460    
pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS81 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
              430       440       450       460    

>>CCDS53669.1 NDUFV1 gene_id:4723|Hs108|chr11             (455 aa)
 initn: 3027 init1: 3027 opt: 3027  Z-score: 3734.0  bits: 700.2 E(32554): 1.2e-201
Smith-Waterman score: 3100; 98.1% identity (98.1% similar) in 464 aa overlap (1-464:1-455)

               10        20        30        40        50        60
pF1KB8 MLATRRLLGWSLPARVSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
       :::::::::::::::         ::::::::::::::::::::::::::::::::::::
CCDS53 MLATRRLLGWSLPAR---------TAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRG
               10                 20        30        40        50 

               70        80        90       100       110       120
pF1KB8 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 DWYKTKEILLKGPDWILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEG
              60        70        80        90       100       110 

              130       140       150       160       170       180
pF1KB8 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EPGTCKDREILRHDPHKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAG
             120       130       140       150       160       170 

              190       200       210       220       230       240
pF1KB8 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 LIGKNACGSGYDFDVFVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPT
             180       190       200       210       220       230 

              250       260       270       280       290       300
pF1KB8 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TVANVETVAVSPTICRRGGTWFAGFGRERNSGTKLFNISGHVNHPCTVEEEMSVPLKELI
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB8 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 EKHAGGVTGGWDNLLAVIPGGSSTPLIPKSVCETVLMDFDALVQAQTGLGTAAVIVMDRS
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB8 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 TDIVKAIARLIEFYKHESCGQCTPCREGVDWMNKVMARFVRGDARPAEIDSLWEISKQIE
             360       370       380       390       400       410 

              430       440       450       460    
pF1KB8 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS53 GHTICALGDGAAWPVQGLIRHFRPELEERMQRFAQQHQARQAAS
             420       430       440       450     




464 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 01:18:52 2016 done: Mon Nov  7 01:18:52 2016
 Total Scan time:  3.120 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]