FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8222, 325 aa
  1>>>pF1KB8222 325 - 325 aa - 325 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3380+/-0.000609; mu= 9.0693+/- 0.037
 mean_var=155.2621+/-30.902, 0's: 0 Z-trim(118.1): 11  B-trim: 0 in 0/52
 Lambda= 0.102930
 statistics sampled from 18911 (18921) to 18911 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.854), E-opt: 0.2 (0.581), width:  16
 Scan time:  3.460

The best scores are:                                      opt bits E(32554)
CCDS7024.1 NPDC1 gene_id:56654|Hs108|chr9          ( 325) 2283 349.7 1.9e-96


>>CCDS7024.1 NPDC1 gene_id:56654|Hs108|chr9               (325 aa)
 initn: 2283 init1: 2283 opt: 2283  Z-score: 1845.1  bits: 349.7 E(32554): 1.9e-96
Smith-Waterman score: 2283; 100.0% identity (100.0% similar) in 325 aa overlap (1-325:1-325)

               10        20        30        40        50        60
pF1KB8 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 MATPLPPPSPRHLRLLRLLLSGLVLGAALRGAAAGHPDVAACPGSLDCALKRRARCPPGA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 HACGPCLQPFQEDQQGLCVPRMRRPPGGGRPQPRLEDEIDFLAQELARKESGHSTPPLPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DRQRLPEPATLGFSARGQGLELGLPSTPGTPTPTPHTSLGSPVSSDPVHMSPLEPRGGQG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB8 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 DGLALVLILAFCVAGAAALSVASLCWCRLQREIRLTQKADYATAKAPGSPAAPRISPGDQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB8 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS70 RLAQSAEMYHYQHQRQQMLCLERHKEPPKELDTASSDEENEDGDFTVYECPGLAPTGEME
              250       260       270       280       290       300

              310       320     
pF1KB8 VRNPLFDHAALSAPLPAPSSPPALP
       :::::::::::::::::::::::::
CCDS70 VRNPLFDHAALSAPLPAPSSPPALP
              310       320     




325 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:57:19 2016 done: Mon Nov  7 15:57:20 2016
 Total Scan time:  3.460 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]