FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8118, 178 aa
  1>>>pF1KB8118 178 - 178 aa - 178 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.6791+/-0.000682; mu= 7.9076+/- 0.041
 mean_var=116.4250+/-23.072, 0's: 0 Z-trim(113.9): 14  B-trim: 7 in 1/51
 Lambda= 0.118864
 statistics sampled from 14519 (14526) to 14519 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.787), E-opt: 0.2 (0.446), width:  16
 Scan time:  2.160

The best scores are:                                      opt bits E(32554)
CCDS2942.1 PCNP gene_id:57092|Hs108|chr3           ( 178) 1154 207.6 3.4e-54


>>CCDS2942.1 PCNP gene_id:57092|Hs108|chr3                (178 aa)
 initn: 1154 init1: 1154 opt: 1154  Z-score: 1086.4  bits: 207.6 E(32554): 3.4e-54
Smith-Waterman score: 1154; 100.0% identity (100.0% similar) in 178 aa overlap (1-178:1-178)

               10        20        30        40        50        60
pF1KB8 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 MADGKAGDEKPEKSQRAGAAGGPEEEAEKPVKTKTVSSSNGGESSSRSAEKRSAEEEAAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 LPTKPTKISKFGFAIGSQTTKKASAISIKLGSSKPKETVPTLAPKTLSVAAAFNEDEDSE
               70        80        90       100       110       120

              130       140       150       160       170        
pF1KB8 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS29 PEEMPPEAKMRMKNIGRDTPTSAGPNSFNKGKHGFSDNQKLWERNIKSHLGNVHDQDN
              130       140       150       160       170        




178 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 14:30:40 2016 done: Mon Nov  7 14:30:40 2016
 Total Scan time:  2.160 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]