FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7977, 305 aa
  1>>>pF1KB7977 305 - 305 aa - 305 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.0575+/-0.000881; mu= 9.1035+/- 0.053
 mean_var=138.9877+/-28.984, 0's: 0 Z-trim(111.0): 168  B-trim: 1236 in 3/48
 Lambda= 0.108789
 statistics sampled from 11839 (12029) to 11839 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.732), E-opt: 0.2 (0.37), width:  16
 Scan time:  2.620

The best scores are:                                      opt bits E(32554)
CCDS31736.1 NANOG gene_id:79923|Hs108|chr12        ( 305) 2130 345.3 3.4e-95
CCDS73436.1 NANOG gene_id:79923|Hs108|chr12        ( 289) 1266 209.7 2.2e-54


>>CCDS31736.1 NANOG gene_id:79923|Hs108|chr12             (305 aa)
 initn: 2130 init1: 2130 opt: 2130  Z-score: 1822.5  bits: 345.3 E(32554): 3.4e-95
Smith-Waterman score: 2130; 100.0% identity (100.0% similar) in 305 aa overlap (1-305:1-305)

               10        20        30        40        50        60
pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
              250       260       270       280       290       300

            
pF1KB7 QPEDV
       :::::
CCDS31 QPEDV
            

>>CCDS73436.1 NANOG gene_id:79923|Hs108|chr12             (289 aa)
 initn: 1457 init1: 1136 opt: 1266  Z-score: 1090.0  bits: 209.7 E(32554): 2.2e-54
Smith-Waterman score: 1981; 94.8% identity (94.8% similar) in 305 aa overlap (1-305:1-289)

               10        20        30        40        50        60
pF1KB7 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSVDPACPQSLPCFEASDCKESSPMPVICGPEENYPSLQMSSAEMPHTETVSPLPSSMDL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LIQDSPDSSTSPKGKQPTSAEKSVAKKEDKVPVKKQKTRTVFSSTQLCVLNDRFQRQKYL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQKASAPTYPSLYSS
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS73 SLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQKNNWPKNSNGVTQ-------------
              130       140       150       160                    

              190       200       210       220       230       240
pF1KB7 YHQGCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
          :::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ---GCLVNPTGNLPMWSNQTWNNSTWSNQTQNIQSWSNHSWNTQTWCTQSWNNQAWNSPF
          170       180       190       200       210       220    

              250       260       270       280       290       300
pF1KB7 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YNCGEESLQSCMQFQPNSPASDLEAALEAAGEGLNVIQQTTRYFSTPQTMDLFLNYSMNM
          230       240       250       260       270       280    

            
pF1KB7 QPEDV
       :::::
CCDS73 QPEDV
            




305 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 19:53:58 2016 done: Sun Nov  6 19:53:58 2016
 Total Scan time:  2.620 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]