Result of FASTA (ccds) for
pFN21AB7962
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7962, 397 aa
1>>>pF1KB7962 397 - 397 aa - 397 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.1897+/-0.000879; mu= 10.4861+/- 0.054
mean_var=228.0644+/-52.720, 0's: 0 Z-trim(113.1): 157 B-trim: 507 in 1/49
Lambda= 0.084927
statistics sampled from 13571 (13754) to 13571 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.422), width: 16
Scan time: 3.160
The best scores are: opt bits E(32554)
CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 ( 397) 2730 347.3 1.5e-95
CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 ( 388) 2590 330.1 2.1e-90
CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 ( 406) 1029 138.9 8.2e-33
CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 ( 359) 514 75.7 7.5e-14
CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 ( 349) 475 70.9 2e-12
CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 ( 145) 451 67.5 9.1e-12
CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 ( 156) 451 67.5 9.5e-12
CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 ( 163) 451 67.5 9.8e-12
CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 ( 402) 457 68.8 1e-11
CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 ( 397) 454 68.4 1.3e-11
CCDS1338.1 LHX4 gene_id:89884|Hs108|chr1 ( 390) 451 68.0 1.7e-11
CCDS44534.1 LMO1 gene_id:4004|Hs108|chr11 ( 156) 440 66.2 2.4e-11
CCDS58118.1 LMO1 gene_id:4004|Hs108|chr11 ( 155) 438 65.9 2.9e-11
CCDS56583.1 LHX6 gene_id:26468|Hs108|chr9 ( 363) 436 66.2 5.7e-11
CCDS56584.1 LHX6 gene_id:26468|Hs108|chr9 ( 366) 436 66.2 5.7e-11
CCDS6837.2 LHX6 gene_id:26468|Hs108|chr9 ( 377) 436 66.2 5.8e-11
CCDS6838.2 LHX6 gene_id:26468|Hs108|chr9 ( 392) 436 66.2 6e-11
CCDS713.1 LMO4 gene_id:8543|Hs108|chr1 ( 165) 426 64.5 8.2e-11
>>CCDS1393.1 LHX9 gene_id:56956|Hs108|chr1 (397 aa)
initn: 2730 init1: 2730 opt: 2730 Z-score: 1829.0 bits: 347.3 E(32554): 1.5e-95
Smith-Waterman score: 2730; 100.0% identity (100.0% similar) in 397 aa overlap (1-397:1-397)
10 20 30 40 50 60
pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT
310 320 330 340 350 360
370 380 390
pF1KB7 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF
:::::::::::::::::::::::::::::::::::::
CCDS13 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF
370 380 390
>>CCDS30962.1 LHX9 gene_id:56956|Hs108|chr1 (388 aa)
initn: 2590 init1: 2590 opt: 2590 Z-score: 1736.4 bits: 330.1 E(32554): 2.1e-90
Smith-Waterman score: 2590; 100.0% identity (100.0% similar) in 379 aa overlap (19-397:10-388)
10 20 30 40 50 60
pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM
::::::::::::::::::::::::::::::::::::::::::
CCDS30 MLNGTTLEAAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGM
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 PPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 KEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSL
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 VYCRAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIV
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 NYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQL
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS30 AQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTAT
300 310 320 330 340 350
370 380 390
pF1KB7 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF
:::::::::::::::::::::::::::::::::::::
CCDS30 TLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLTNLF
360 370 380
>>CCDS6853.1 LHX2 gene_id:9355|Hs108|chr9 (406 aa)
initn: 1824 init1: 930 opt: 1029 Z-score: 702.6 bits: 138.9 E(32554): 8.2e-33
Smith-Waterman score: 1891; 70.3% identity (85.5% similar) in 407 aa overlap (20-397:1-406)
10 20 30 40 50
pF1KB7 MEIVGCRAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKTEARLAKGAQLNG-RDAG
::::..:: ...:...::.::.:.:: ..: : ..
CCDS68 MLFHSLSGPEVHGVIDEMDRRAKSEAPAISSAIDRGDTETT
10 20 30 40
60 70 80 90 100 110
pF1KB7 MPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIY
:: .: .. ::::::::::::::::::::::::.:::::::::: ::::::::.::::::
CCDS68 MPSISSDRAALCAGCGGKISDRYYLLAVDKQWHMRCLKCCECKLNLESELTCFSKDGSIY
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB7 CKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDS
:::::::::::::::::::::::::::::::: ::::.::::.:::: ::::::::::::
CCDS68 CKEDYYRRFSVQRCARCHLGISASEMVMRARDLVYHLNCFTCTTCNKMLTTGDHFGMKDS
110 120 130 140 150 160
180 190 200 210 220
pF1KB7 LVYCRAHFETLLQGEYPPQLSYTELAA--------KSGGLA--------LPYFNGTGTVQ
::::: :::.::::::: .......:: ::.::. :::.::.::::
CCDS68 LVYCRLHFEALLQGEYPAHFNHADVAAAAAAAAAAKSAGLGAAGANPLGLPYYNGVGTVQ
170 180 190 200 210 220
230 240 250 260 270 280
pF1KB7 KGRPRKRKSPALGVDIVNYNSG--CNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRT
::::::::::. :.:.. ::.. ::::.:.:::::: ::: ::::::::::::::::::
CCDS68 KGRPRKRKSPGPGADLAAYNAALSCNENDAEHLDRDQ-PYPSSQKTKRMRTSFKHHQLRT
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB7 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTS
:::::::::::::::::::::::::::::::::::::::::::::::::: ::::. ..
CCDS68 MKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENTGVDKSTDAA
290 300 310 320 330 340
350 360 370 380 390
pF1KB7 L----PAPPSAD--SGALTPPGTATTLTDLTNPTI----TVVTSVTSNMDSHESGSPSQT
: :. :... ...:.: .: :::::::.::. .:.::: .:...:: :::::
CCDS68 LQTGTPSGPASELSNASLSPSSTPTTLTDLTSPTLPTVTSVLTSVPGNLEGHEPHSPSQT
350 360 370 380 390 400
pF1KB7 TLTNLF
::::::
CCDS68 TLTNLF
>>CCDS10290.1 ISL2 gene_id:64843|Hs108|chr15 (359 aa)
initn: 412 init1: 250 opt: 514 Z-score: 362.1 bits: 75.7 E(32554): 7.5e-14
Smith-Waterman score: 621; 37.3% identity (62.4% similar) in 287 aa overlap (60-342:14-267)
30 40 50 60 70 80
pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKP--ALCAGCGGKISDRYYL-LA
: : .:: :.:.:::..: :.. : ..
CCDS10 MVDIIFHYPFLGAMGDHSKKKPGTAMCVGCGSQIHDQFILRVS
10 20 30 40
90 100 110 120 130 140
pF1KB7 VDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMV
: .:: :::: ::. :. :::..::. :::.:: : :.. .::.:..:.:.:..:
CCDS10 PDLEWHAACLKCAECSQYLDETCTCFVRDGKTYCKRDYVRLFGI-KCAKCQVGFSSSDLV
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB7 MRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELAA
:::::::::. :: ::.:.. : ::.:.... . ::: ::. . .
CCDS10 MRARDSVYHIECFRCSVCSRQLLPGDEFSLREHELLCRADHGLLLE-------RAAAGSP
110 120 130 140 150
210 220 230 240 250 260
pF1KB7 KSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQK
.: : :: : . : :. ::: :. .. ..:
CCDS10 RSPG-PLPGARGLHLPDAGSGRQ---PAL---------------RPHVHKQ------TEK
160 170 180 190
270 280 290 300 310 320
pF1KB7 TKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FRRN
: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : ...
CCDS10 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKKS
200 210 220 230 240 250
330 340 350 360 370 380
pF1KB7 LLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHES
.: .. ...: :::
CCDS10 ILMKQLQQQQHSDKTSLQGLTGTPLVAGSPIRHENAVQGSAVEVQTYQPPWKALSEFALQ
260 270 280 290 300 310
>>CCDS43314.1 ISL1 gene_id:3670|Hs108|chr5 (349 aa)
initn: 421 init1: 259 opt: 475 Z-score: 336.4 bits: 70.9 E(32554): 2e-12
Smith-Waterman score: 604; 34.5% identity (61.7% similar) in 313 aa overlap (57-356:3-281)
30 40 50 60 70 80
pF1KB7 GGHIQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYL-L
: : :: . . .::.:::..: :.: : .
CCDS43 MGDMGDPPKKKRLISLCVGCGNQIHDQYILRV
10 20 30
90 100 110 120 130 140
pF1KB7 AVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEM
. : .:: :::: ::. :. :::..::. :::.:: : ... .::.: .:.: ...
CCDS43 SPDLEWHAACLKCAECNQYLDESCTCFVRDGKTYCKRDYIRLYGI-KCAKCSIGFSKNDF
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGEYPPQLSYTELA
:::::..:::. :: : .:.. : ::.:..... ..::: ... : :
CCDS43 VMRARSKVYHIECFRCVACSRQLIPGDEFALREDGLFCRADHDVV------------ERA
100 110 120 130
210 220 230 240 250 260
pF1KB7 AKSGGLALPYFNGTGTVQ-KGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
. ..: : .. . .: ..: . ..::: :. . ::
CCDS43 SLGAGDPLSPLHPARPLQMAAEPISARQPAL---------------RPHVHK--QP----
140 150 160 170
270 280 290 300 310 320
pF1KB7 QKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAK-FR
.:: :.:: ....::.:... .: : ::: .::.. :::. ::..::::: : : .
CCDS43 EKTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK
180 190 200 210 220 230
330 340 350 360 370
pF1KB7 RNLLR---QENGGVDKAD-----GTSLPA--PPSADSGALTPPGTATTLTDLTNPTITVV
:... :.. ::.. :: . : : :.: . :
CCDS43 RSIMMKQLQQQQPNDKTNIQGMTGTPMVAASPERHDGGLQANPVEVQSYQPPWKVLSDFA
240 250 260 270 280 290
380 390
pF1KB7 TSVTSNMDSHESGSPSQTTLTNLF
CCDS43 LQSDIDQPAFQQLVNFSEGGPGSNSTGSEVASMSSQLPDTPNSMVASPIEA
300 310 320 330 340
>>CCDS8678.1 LMO3 gene_id:55885|Hs108|chr12 (145 aa)
initn: 404 init1: 227 opt: 451 Z-score: 324.7 bits: 67.5 E(32554): 9.1e-12
Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:1-144)
30 40 50 60 70 80
pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD
: ..:. :: ::::. ::.::: : :.:
CCDS86 MLSVQPDTKPKGCAGCNRKIKDRYLLKALD
10 20 30
90 100 110 120 130 140
pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM
: :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : ::
CCDS86 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM
40 50 60 70 80
150 160 170 180 190 200
pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL
::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::.
CCDS86 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
90 100 110 120 130 140
210 220 230 240 250 260
pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
>>CCDS58211.1 LMO3 gene_id:55885|Hs108|chr12 (156 aa)
initn: 404 init1: 227 opt: 451 Z-score: 324.4 bits: 67.5 E(32554): 9.5e-12
Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:12-155)
30 40 50 60 70 80
pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD
: ..:. :: ::::. ::.::: : :.:
CCDS58 MQKKEKSFGIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALD
10 20 30 40
90 100 110 120 130 140
pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM
: :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : ::
CCDS58 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL
::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::.
CCDS58 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
110 120 130 140 150
210 220 230 240 250 260
pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
>>CCDS58212.1 LMO3 gene_id:55885|Hs108|chr12 (163 aa)
initn: 380 init1: 227 opt: 451 Z-score: 324.2 bits: 67.5 E(32554): 9.8e-12
Smith-Waterman score: 451; 46.9% identity (70.3% similar) in 145 aa overlap (60-199:19-162)
30 40 50 60 70 80
pF1KB7 IQGIMEEMERRSKTEARLAKGAQLNGRDAGMPPLSPE-KPALCAGCGGKISDRYYLLAVD
: ..:. :: ::::. ::.::: : :.:
CCDS58 MLMEGGRAAAARNVSSIQMLSVQPDTKPKGCAGCNRKIKDRYLLKALD
10 20 30 40
90 100 110 120 130 140
pF1KB7 KQWHLRCLKC--CECKLALESELTCFAKDGSIYCKEDYYRRFSVQ-RCARCHLGISASEM
: :: :::: :.:.:. : : ..: . : :..:: : :.: :: : : : ::
CCDS58 KYWHEDCLKCACCDCRLG-EVGSTLYTKANLILCRRDYLRLFGVTGNCAACSKLIPAFEM
50 60 70 80 90 100
150 160 170 180 190 200
pF1KB7 VMRARDSVYHLSCFTCSTCNKTLTTGDHFGMKDSLVYCRAHFETLLQGE-YPPQLSYTEL
::::.:.::::.::.:. ::. . .::.: .:.... :.. .: :. : : ::.
CCDS58 VMRAKDNVYHLDCFACQLCNQRFCVGDKFFLKNNMILCQTDYEEGLMKEGYAPQVR
110 120 130 140 150 160
210 220 230 240 250 260
pF1KB7 AAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPS
>>CCDS6995.1 LHX3 gene_id:8022|Hs108|chr9 (402 aa)
initn: 561 init1: 183 opt: 457 Z-score: 323.8 bits: 68.8 E(32554): 1e-11
Smith-Waterman score: 481; 34.4% identity (54.5% similar) in 299 aa overlap (37-332:1-225)
10 20 30 40 50 60
pF1KB7 RAEDNSCPFRPPAMLFHGISGGHIQGIMEEMERRSKT-EARLAKGAQLN-GRDAGMPPLS
:: :.. :: . :..: . : :
CCDS69 MEARGELGPARESAGGDLLLALLARRADLR
10 20 30
70 80 90 100 110 120
pF1KB7 PEKPALCAGCGGKISDRYYLLAVDKQWHLRCLKCCECKLALESELTCFAKDGSIYCKEDY
: : ::::: .: ::. : :.:..:: .:::: .:. : . ::.. :.:::.:.
CCDS69 REIP-LCAGCDQHILDRFILKALDRHWHSKCLKCSDCHTPLAER--CFSRGESVYCKDDF
40 50 60 70 80
130 140 150 160 170 180
pF1KB7 YRRFSVQRCARCHLGISASEMVMRARDSVYHLSCFTCSTCNKTLTTGDHFG-MKDSLVYC
..::.. .:: :.::: ...: ::.: :::: ::.: .:.. :.:::.: :.:: . :
CCDS69 FKRFGT-KCAACQLGIPPTQVVRRAQDFVYHLHCFACVVCKRQLATGDEFYLMEDSRLVC
90 100 110 120 130 140
190 200 210 220 230 240
pF1KB7 RAHFETLLQGEYPPQLSYTELAAKSGGLALPYFNGTGTVQKGRPRKRKSPALGVDIVNYN
.: .:: : : .: .:: :::
CCDS69 KADYETAKQRE-------AEATAK------------------RPR---------------
150 160
250 260 270 280 290 300
pF1KB7 SGCNENEADHLDRDQQPYPPSQKTKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQK
:.. .::.:.:: . . .: . .::...
CCDS69 ----------------------------TTITAKQLETLKSAYNTSPKPARHVREQLSSE
170 180 190
310 320 330 340 350 360
pF1KB7 TGLTKRVLQVWFQNARAKFRRNLLRQENGGVDKADGTSLPAPPSADSGALTPPGTATTLT
::: ::.:::::: ::: .: :... :
CCDS69 TGLDMRVVQVWFQNRRAKEKR--LKKDAGRQRWGQYFRNMKRSRGGSKSDKDSVQEGQDS
200 210 220 230 240 250
>>CCDS6994.1 LHX3 gene_id:8022|Hs108|chr9 (397 aa)
initn: 561 init1: 183 opt: 454 Z-score: 321.9 bits: 68.4 E(32554): 1.3e-11
Smith-Waterman score: 478; 35.1% identity (55.2% similar) in 268 aa overlap (66-332:27-220)
40 50 60 70 80 90
pF1KB7 EMERRSKTEARLAKGAQLNGRDAGMPPLSPEKPALCAGCGGKISDRYYLLAVDKQWHLRC
: : ::::: .: ::. : :.:..:: .:
CCDS69 MLLETGLERDRARPGAAAVCTLGGTREIP-LCAGCDQHILDRFILKALDRHWHSKC
10 20 30 40 50
100 110 120 130 140 150
pF1KB7 LKCCECKLALESELTCFAKDGSIYCKEDYYRRFSVQRCARCHLGISASEMVMRARDSVYH
::: .:. : . ::.. :.:::.:...::.. .:: :.::: ...: ::.: :::
CCDS69 LKCSDCHTPLAER--CFSRGESVYCKDDFFKRFGT-KCAACQLGIPPTQVVRRAQDFVYH
60 70 80 90 100 110
160 170 180 190 200 210
pF1KB7 LSCFTCSTCNKTLTTGDHFG-MKDSLVYCRAHFETLLQGEYPPQLSYTELAAKSGGLALP
: ::.: .:.. :.:::.: :.:: . :.: .:: : : .: .::
CCDS69 LHCFACVVCKRQLATGDEFYLMEDSRLVCKADYETAKQRE-------AEATAK-------
120 130 140 150
220 230 240 250 260 270
pF1KB7 YFNGTGTVQKGRPRKRKSPALGVDIVNYNSGCNENEADHLDRDQQPYPPSQKTKRMRTSF
::: :..
CCDS69 -----------RPR-------------------------------------------TTI
160
280 290 300 310 320 330
pF1KB7 KHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLRQENGGV
.::.:.:: . . .: . .::...::: ::.:::::: ::: .: :... :
CCDS69 TAKQLETLKSAYNTSPKPARHVREQLSSETGLDMRVVQVWFQNRRAKEKR--LKKDAGRQ
170 180 190 200 210 220
340 350 360 370 380 390
pF1KB7 DKADGTSLPAPPSADSGALTPPGTATTLTDLTNPTITVVTSVTSNMDSHESGSPSQTTLT
CCDS69 RWGQYFRNMKRSRGGSKSDKDSVQEGQDSDAEVSFPDEPSLAEMGPANGLYGSLGEPTQA
230 240 250 260 270 280
397 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:31:09 2016 done: Sun Nov 6 05:31:09 2016
Total Scan time: 3.160 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]