Result of FASTA (omim) for
pFN21AB7941
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7941, 343 aa
1>>>pF1KB7941 343 - 343 aa - 343 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8340+/-0.000296; mu= 3.2090+/- 0.019
mean_var=237.6187+/-47.949, 0's: 0 Z-trim(125.4): 182 B-trim: 720 in 1/58
Lambda= 0.083202
statistics sampled from 48878 (49150) to 48878 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.843), E-opt: 0.2 (0.576), width: 16
Scan time: 9.710
The best scores are: opt bits E(85289)
NP_068777 (OMIM: 142995) H2.0-like homeobox protei ( 488) 351 54.2 7.1e-07
NP_002720 (OMIM: 604420) hematopoietically-express ( 270) 287 46.3 9.4e-05
XP_011541345 (OMIM: 604823) PREDICTED: homeobox pr ( 233) 282 45.6 0.00013
NP_003649 (OMIM: 604823) homeobox protein BarH-lik ( 279) 282 45.7 0.00015
NP_067545 (OMIM: 603260) homeobox protein BarH-lik ( 254) 274 44.7 0.00027
NP_005212 (OMIM: 220600,600028) homeobox protein D ( 289) 273 44.6 0.00032
NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 ( 367) 275 44.9 0.00032
NP_066305 (OMIM: 604640) T-cell leukemia homeobox ( 291) 266 43.8 0.00057
NP_005506 (OMIM: 142994,176450) motor neuron and p ( 401) 268 44.1 0.00061
NP_005211 (OMIM: 104510,190320,600525) homeobox pr ( 287) 257 42.7 0.0012
NP_038463 (OMIM: 601881,611038) retinal homeobox p ( 346) 253 42.3 0.0019
NP_796374 (OMIM: 605955) homeobox protein Nkx-6.2 ( 277) 251 41.9 0.0019
NP_076921 (OMIM: 142963) homeobox protein Hox-B8 [ ( 243) 249 41.7 0.0021
XP_016880053 (OMIM: 142963) PREDICTED: homeobox pr ( 243) 249 41.7 0.0021
XP_016872278 (OMIM: 605955) PREDICTED: homeobox pr ( 277) 250 41.8 0.0021
NP_064447 (OMIM: 605212) barH-like 2 homeobox prot ( 387) 252 42.2 0.0023
NP_001091639 (OMIM: 611074) brain-specific homeobo ( 233) 240 40.6 0.0042
XP_011541346 (OMIM: 604823) PREDICTED: homeobox pr ( 134) 235 39.7 0.0043
XP_005257343 (OMIM: 142963) PREDICTED: homeobox pr ( 242) 239 40.5 0.0047
NP_064448 (OMIM: 605211) barH-like 1 homeobox prot ( 327) 241 40.8 0.005
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 240 40.7 0.0052
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 243 41.2 0.0053
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 243 41.2 0.0053
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 243 41.2 0.0053
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 243 41.2 0.0053
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 243 41.2 0.0053
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 243 41.2 0.0053
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 243 41.2 0.0053
NP_001158727 (OMIM: 142994,176450) motor neuron an ( 189) 235 39.9 0.0055
XP_011538046 (OMIM: 186770) PREDICTED: T-cell leuk ( 342) 238 40.5 0.0066
NP_149416 (OMIM: 607808) homeobox protein Nkx-2.4 ( 354) 238 40.5 0.0068
NP_006483 (OMIM: 136760,606014) homeobox protein a ( 343) 236 40.2 0.0078
XP_016867292 (OMIM: 220600,600028) PREDICTED: home ( 161) 229 39.1 0.008
XP_005250242 (OMIM: 220600,600028) PREDICTED: home ( 161) 229 39.1 0.008
NP_006553 (OMIM: 604255) transcription factor LBX1 ( 281) 233 39.8 0.0087
NP_001129743 (OMIM: 217095,611770) homeobox protei ( 301) 233 39.8 0.0091
XP_011538047 (OMIM: 186770) PREDICTED: T-cell leuk ( 269) 231 39.5 0.0099
>>NP_068777 (OMIM: 142995) H2.0-like homeobox protein [H (488 aa)
initn: 375 init1: 306 opt: 351 Z-score: 244.4 bits: 54.2 E(85289): 7.1e-07
Smith-Waterman score: 392; 33.1% identity (54.4% similar) in 329 aa overlap (5-298:77-392)
10 20 30
pF1KB7 MMFPGLLAPPAGYP----SLLRPTPTLTLPQSLQ
: . : :.. : :::::... :. .
NP_068 ADILHAGVGDLGAAPEGLAGASAAALTAHLGSVHPHASFQAAARSPLRPTPVVA-PSEVP
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB7 SAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSR
..: . : : . .: .. : .. :: : : :: : :. :.:
NP_068 AGFPQRLSPLSAAYHH-HHPQQQQQQQQPQQQQPPP---PPRA----GA--LQPPASGTR
110 120 130 140 150
100 110 120 130 140
pF1KB7 RGGSPPTAFS-PASETTFLKFGVNAILSS--GPRTETSPALLQSVPPKTFAFP-------
.: . : :: . ::::.. :::. :... . .: . . : . :
NP_068 VVPNPHHSGSAPAPSSKDLKFGIDRILSAEFDPKVKEGNTLRDLTSLLTGGRPAGVHLSG
160 170 180 190 200 210
150 160 170 180
pF1KB7 ------YFEGSFQPFIRSSYF-------PASSSVVPIPGTFSWPLAARGK---P----RR
: .:..:. ..: . : .: . :: : :. : : :.
NP_068 LQPSAGQFFASLDPINEASAILSPLNSNPRNSVQHQFQDTFPGPYAVLTKDTMPQTYKRK
220 230 240 250 260 270
190 200 210 220 230 240
pF1KB7 GMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSK
:::::..:::.::: :. :::..:::::.::: ::: :.:::.::::::::::.::
NP_068 RSWSRAVFSNLQRKGLEKRFEIQKYVTKPDRKQLAAMLGLTDAQVKVWFQNRRMKWRHSK
280 290 300 310 320 330
250 260 270 280 290
pF1KB7 ERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEE-EEEGPGSPSHRLAYHASSDPQH
: . .. . :. : : .. ...:. : : :. .: :. : . : :: .
NP_068 EAQAQKDKDKEAGEKPSGGAPAAD-GEQDERSPSRSEGEAESESSDSESLDM-APSDTER
340 350 360 370 380 390
300 310 320 330 340
pF1KB7 LRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS
NP_068 TEGSERSLHQTTVIKAPVTGALITASSAGSGGSSGGGGNSFSFSSASSLSSSSTSAGCAS
400 410 420 430 440 450
>>NP_002720 (OMIM: 604420) hematopoietically-expressed h (270 aa)
initn: 249 init1: 226 opt: 287 Z-score: 206.3 bits: 46.3 E(85289): 9.4e-05
Smith-Waterman score: 287; 28.7% identity (51.7% similar) in 265 aa overlap (51-302:8-259)
30 40 50 60 70
pF1KB7 PTLTLPQSLQSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSP---PRQGAPTALTDT
:: .:: . .: : . .: . :
NP_002 MQYPHPGPAAGAVGVPLYAPTPLLQPAHPTPFYIEDI
10 20 30
80 90 100 110 120 130
pF1KB7 GASDLGSPGPGSRRGGSPPTAF----SPASETTFLKFGVNAILSSGPRTETSPALLQSVP
. ..: :. :: ..: :: .. .. .: ... :: .
NP_002 LGRGPAAPTPAPTLP-SPNSSFTSLVSPYRTPVYEPTPIHPAFSH----HSAAALAAAYG
40 50 60 70 80 90
140 150 160 170 180
pF1KB7 PKTFAFPYFEGSFQPFIRS--SYFPASSSVVPIPGTFSW-PLAARGKPRR--GMLRRAVF
: :. : . :: :. .: : :. . : :. : .: :..: :
NP_002 PGGFGGPLY-----PFPRTVNDYTHALLRHDPLGKPLLWSPFLQRPLHKRKGGQVR---F
100 110 120 130 140
190 200 210 220 230 240
pF1KB7 SDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSG
:. : ::: :. :::.: :.::.:: : :.. ::: :::::: ::: :... :.
NP_002 SNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRLKQENPQSNK
150 160 170 180 190 200
250 260 270 280 290 300
pF1KB7 GCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHR-LAYHASSDPQHLRDPRLPG
. ..: .. . . :: . .:: . . . .:. :.. : . : : .. :
NP_002 KEELESLDSSCDQRQDLPSEQNKGASLDSSQCSPSPASQEDLESEISEDSDQEVDIEGDK
210 220 230 240 250 260
310 320 330 340
pF1KB7 PLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS
NP_002 SYFNAG
270
>>XP_011541345 (OMIM: 604823) PREDICTED: homeobox protei (233 aa)
initn: 224 init1: 202 opt: 282 Z-score: 203.9 bits: 45.6 E(85289): 0.00013
Smith-Waterman score: 282; 32.6% identity (59.4% similar) in 175 aa overlap (152-319:61-229)
130 140 150 160 170 180
pF1KB7 TETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRG
:. :.. ... . : . ::::.
XP_011 TRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRS
40 50 60 70 80 90
190 200 210 220 230
pF1KB7 MLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRN---
:..:...: .::: ::::::.: ::: :: .::: . ::: :.:::::::..
XP_011 ---RTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL
100 110 120 130 140
240 250 260 270 280 290
pF1KB7 --SKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYH--AS
..: .: .....::. . . . ..... :.:. : . :. : . :
XP_011 KGGQEAPTKPKGRPKKNSIPTSEEIEAE-EKMNSQAQGQEQLEPSQGQEELCEAQEPKAR
150 160 170 180 190 200
300 310 320 330 340
pF1KB7 SDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS
. : .. .: : : : :: :
XP_011 DVPLEMAEP--PDPPQELPIPSSEPPPLS
210 220 230
>>NP_003649 (OMIM: 604823) homeobox protein BarH-like 2 (279 aa)
initn: 224 init1: 202 opt: 282 Z-score: 202.9 bits: 45.7 E(85289): 0.00015
Smith-Waterman score: 282; 32.6% identity (59.4% similar) in 175 aa overlap (152-319:107-275)
130 140 150 160 170 180
pF1KB7 TETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRG
:. :.. ... . : . ::::.
NP_003 TRQPTVISHLVPATPGIAQALSCHQVTEAVSAEAPGGEALASSESETEQPTPRQKKPRRS
80 90 100 110 120 130
190 200 210 220 230
pF1KB7 MLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRN---
:..:...: .::: ::::::.: ::: :: .::: . ::: :.:::::::..
NP_003 ---RTIFTELQLMGLEKKFQKQKYLSTPDRLDLAQSLGLTQLQVKTWYQNRRMKWKKMVL
140 150 160 170 180 190
240 250 260 270 280 290
pF1KB7 --SKERELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYH--AS
..: .: .....::. . . . ..... :.:. : . :. : . :
NP_003 KGGQEAPTKPKGRPKKNSIPTSEEIEAE-EKMNSQAQGQEQLEPSQGQEELCEAQEPKAR
200 210 220 230 240 250
300 310 320 330 340
pF1KB7 SDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS
. : .. .: : : : :: :
NP_003 DVPLEMAEP--PDPPQELPIPSSEPPPLS
260 270
>>NP_067545 (OMIM: 603260) homeobox protein BarH-like 1 (254 aa)
initn: 339 init1: 218 opt: 274 Z-score: 198.2 bits: 44.7 E(85289): 0.00027
Smith-Waterman score: 341; 35.7% identity (57.7% similar) in 227 aa overlap (85-288:39-250)
60 70 80 90 100 110
pF1KB7 PRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAFSPASETTFLKFGVNA
::: .:..: .: . :.: .:::::.:
NP_067 AARFGPPEGCADHRPHRYRSFMIEEILTEPPGP---KGAAPAAAAAAAGE--LLKFGVQA
10 20 30 40 50 60
120 130 140 150 160 170
pF1KB7 ILSSGPRTETSPALLQSVPPKTFAFPYFEGSFQPFIRSSYFPASSSVVP-IPGTFSWP--
.:.. : .. :.:.. .: :: . :. :. : .. : .::. . :
NP_067 LLAARP-FHSHLAVLKAEQAAVFKFP-----LAPLGCSGLSSALLAAGPGLPGAAGAPHL
70 80 90 100 110
180 190 200 210
pF1KB7 ---LAARGK-----P-------RRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLAA
: ::: : ..: :.::...: .::: :.::::.: ::: ::
NP_067 PLELQLRGKLEAAGPGEPGTKAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAE
120 130 140 150 160 170
220 230 240 250 260 270
pF1KB7 KLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPT---KLNPHPDLSDVGQ--K
.:::.. ::: :.:::::::. . .:..:: . : : : : : .. . .
NP_067 SLGLSQLQVKTWYQNRRMKWK----KIVLQGGGLESPTKPKGRPKKNSIPTSEQLTEQER
180 190 200 210 220 230
280 290 300 310 320 330
pF1KB7 GPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKPSDFSDSEEE
. :. : :: :: :
NP_067 AKDAEKPAEVPGEPSDRSRED
240 250
>>NP_005212 (OMIM: 220600,600028) homeobox protein DLX-5 (289 aa)
initn: 270 init1: 210 opt: 273 Z-score: 196.8 bits: 44.6 E(85289): 0.00032
Smith-Waterman score: 279; 29.4% identity (56.7% similar) in 245 aa overlap (60-297:24-241)
30 40 50 60 70 80
pF1KB7 QSAFSGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGA--SDLGSPGP
.:.: : : .:: : ...: :: ::
NP_005 MTGVFDRRVPSIRSGDFQAPFQTSAAMHHPSQESPT-LPESSATDSDYYSPTG
10 20 30 40 50
90 100 110 120 130 140
pF1KB7 GSRRGGSPPTAFSPASETTFLKF---GVNAILSSGPRTETSPALLQSVPPKTFAFPYFEG
:. .: ::. : .. . .. :::. :.: : : :..: . .
NP_005 GAPHGYCSPTSASYGKALNPYQYQYHGVNG--SAG-----------SYPAKAYADYSYAS
60 70 80 90
150 160 170 180 190 200
pF1KB7 SFQPFIRSSYFPASSSVVPIPGTFSWPLA--ARGKPRRGMLRRAVFSDVQRKALEKMFQK
:.. . ..: . :.. . : . . :::.. :...:. : ::.. :::
NP_005 SYHQY-GGAYNRVPSATNQPEKEVTEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQK
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB7 QKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPH
.:.. :.: .:::.::: ..::::::::.: :: ......: . :.. .:
NP_005 TQYLALPERAELAASLGLTQTQVKIWFQNKR-----SKIKKIMKNGEMPPEHSPSSSDP-
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB7 PDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPGKP
.. ..: . : :: :. :..: . :
NP_005 -----MACNSPQSPAVWEPQGS-SRSLSHHPHAHPPTSNQSPASSYLENSASWYTSAASS
220 230 240 250 260
330 340
pF1KB7 SDFSDSEEEEEGEEQEEITVS
NP_005 INSHLPPPGSLQHPLALASGTLY
270 280
>>NP_006159 (OMIM: 602563) homeobox protein Nkx-6.1 [Hom (367 aa)
initn: 296 init1: 219 opt: 275 Z-score: 196.8 bits: 44.9 E(85289): 0.00032
Smith-Waterman score: 289; 31.9% identity (55.3% similar) in 257 aa overlap (4-247:69-302)
10 20 30
pF1KB7 MMFPGLLAPPA--GYPSLLRPTPTLTLPQSLQS
:: : ::: : :: : ::.: :
NP_006 AYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSP------PQQL-S
40 50 60 70 80 90
40 50 60 70 80
pF1KB7 AFSGHSSFLVEDLI-RISRP---PAYLPRSVPTASMSPPRQGAPT-----ALTDTGASDL
: . :. ..:.. : : : : :: . :..: : ..: . : . ..:.
NP_006 AATPHG---INDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAA
100 110 120 130 140
90 100 110 120 130 140
pF1KB7 GSPGPGSRRGGSPP-TAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPY
.. .:.. .: : ...:: : :. .: .. .: : .: .: :
NP_006 AASSPAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKP--LAELPGRTPIF--
150 160 170 180 190 200
150 160 170 180 190 200
pF1KB7 FEGSFQ-PFIRSSYFPASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMF
. : .: : :.. . . : :.. : :: .. : .:: : :::: :
NP_006 WPGVMQSPPWRDARLACT----PHQGSIL--LDKDGKRKH---TRPTFSGQQIFALEKTF
210 220 230 240 250
210 220 230 240 250 260
pF1KB7 QKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLN
.. ::.. :.: .:: .::. .::::.:::::: :::... :. ..
NP_006 EQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKG
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB7 PHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRDPRLPGPLPPSPAHSSSPG
NP_006 ASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHASEPESSS
320 330 340 350 360
>>NP_066305 (OMIM: 604640) T-cell leukemia homeobox prot (291 aa)
initn: 243 init1: 193 opt: 266 Z-score: 192.3 bits: 43.8 E(85289): 0.00057
Smith-Waterman score: 290; 32.4% identity (54.4% similar) in 241 aa overlap (64-273:26-260)
40 50 60 70 80 90
pF1KB7 SGHSSFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGG
:: ...::. ::: ::.: ::.: :.
NP_066 MEAPASAQTPHPHEPISFGIDQILNSPDQDSAPAPRGPDGASYLGGP-PGGRPGA
10 20 30 40 50
100 110 120 130
pF1KB7 SPPTAFSPASET----TFLKFGVNAI-LSSGP----RTETSPALLQSVPPKT--------
. :. ::: . : : .. :: .: :. . : .:::
NP_066 TYPSL--PASFAGLGAPFEDAGSYSVNLSLAPAGVIRVPAHRPLPGAVPPPLPSALPAMP
60 70 80 90 100 110
140 150 160 170 180
pF1KB7 ----------FAFPYFEGSFQPFIRSSYFPASSSVVPIPGT--FSWPLAARGKPRRGMLR
. ::..:.: . :... : :.....:. : .. : : :.: :
NP_066 SVPTVSSLGGLNFPWMESSRR-FVKDR-FTAAAALTPFTVTRRIGHPYQNRTPPKRKKPR
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 RAVFSDVQRKALEKMFQKQKYISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWR--NSKER
. :: :: ::: :..:::... .: :: .: . :.::: :::::: ::: ...::
NP_066 TS-FSRVQICELEKRFHRQKYLASAERAALAKSLKMTDAQVKTWFQNRRTKWRRQTAEER
180 190 200 210 220
250 260 270 280 290 300
pF1KB7 ELLSSGGCREQTLPTKLNPHPDLSDVGQKGPGNEEEEEGPGSPSHRLAYHASSDPQHLRD
: . . : . . . .:.: : :
NP_066 EAERQQASRLMLQLQHDAFQKSLNDSIQPDPLCLHNSSLFALQNLQPWEEDSSKVPAVTS
230 240 250 260 270 280
310 320 330 340
pF1KB7 PRLPGPLPPSPAHSSSPGKPSDFSDSEEEEEGEEQEEITVS
NP_066 LV
290
>>NP_005506 (OMIM: 142994,176450) motor neuron and pancr (401 aa)
initn: 340 init1: 187 opt: 268 Z-score: 191.7 bits: 44.1 E(85289): 0.00061
Smith-Waterman score: 268; 29.3% identity (53.7% similar) in 283 aa overlap (70-330:122-388)
40 50 60 70 80 90
pF1KB7 LVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGSPGPGSRRGGSPPTAF
: .: . ..:. :. . : . ::. :
NP_005 PKPGFLGAGGGGGGTGGGHGGPHHHAHPGAAAAAAAAAAAAAAGGLALGLHPGGAQGGAG
100 110 120 130 140 150
100 110 120 130 140
pF1KB7 SPASETTFLK--FGVNAILSSGPRTETSPALLQSVPPKTFAFPYFE--------GSFQ--
::. . . . .: .: ... . ::: : : : : :.::
NP_005 LPAQAALYGHPVYGYSAAAAAAALAGQHPALSYSYPQVQGAHPAHPADPIKLGAGTFQLD
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB7 PFIRSSYFPASSSVVP-IPGTFSWPLAAR-GKPRRGMLRRAVFSDVQRKALEKMFQKQKY
..:.: ... ..: .: : . :: :: :..:.. : ::..:. .::
NP_005 QWLRAS---TAGMILPKMPDFNSQAQSNLLGKCRRP---RTAFTSQQLLELEHQFKLNKY
220 230 240 250 260
210 220 230 240 250 260
pF1KB7 ISKPDRKKLAAKLGLKDSQVKIWFQNRRMKWRNSKERELLSSGGCREQTLPTKLNPHPDL
.:.: : ..:..: : ..:::::::::::::. ::. .::. . .
NP_005 LSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK--------AKEQAAQEAEKQKGGG
270 280 290 300 310
270 280 290 300 310
pF1KB7 SDVGQKG---PGNEEEEEGPGSPS-----HRLAYHASSDPQHLRDPRLPGPLPPSPAHSS
. .:. : :: :: :: .:. .:: .:::.. .: .: : . .:
NP_005 GGAGKGGAEEPGAEELL-GPPAPGDKGSGRRLRDLRDSDPEEDEDEDDEDHFPYSNG-AS
320 330 340 350 360 370
320 330 340
pF1KB7 SPGKPSDFSDSEEEEEGEEQEEITVS
. :: :. ..
NP_005 VHAASSDCSSEDDSPPPRPSHQPAPQ
380 390 400
>>NP_005211 (OMIM: 104510,190320,600525) homeobox protei (287 aa)
initn: 276 init1: 220 opt: 257 Z-score: 186.5 bits: 42.7 E(85289): 0.0012
Smith-Waterman score: 299; 29.1% identity (54.2% similar) in 275 aa overlap (68-324:27-282)
40 50 60 70 80 90
pF1KB7 SFLVEDLIRISRPPAYLPRSVPTASMSPPRQGAPTALTDTGASDLGS-PGPGSRRGGSPP
. .:: : .....::: .: .. :
NP_005 MSGSFDRKLSSILTDISSSLSCHAGSKDSPT-LPESSVTDLGYYSAPQHDYYSGQP
10 20 30 40 50
100 110 120 130 140 150
pF1KB7 TAFSPASETTFLKFGVNAILSSGPRTETSPALLQSVPPKTFAFPYFE-GSFQPFIRSSYF
. . : .:..:.. ..: . : :.. : . :.. : . .
NP_005 YGQTVNPYTYHHQFNLNGLAGTGAYSPKSEY--------TYGASYRQYGAY----REQPL
60 70 80 90 100
160 170 180 190 200 210
pF1KB7 PASSSVVPIPGTFSWPLAARGKPRRGMLRRAVFSDVQRKALEKMFQKQKYISKPDRKKLA
::.. : . . :::.. :...:. : ::.. ::: .:.. :.: .::
NP_005 PAQDPVSVKEEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELA
110 120 130 140 150 160
220 230 240 250 260 270
pF1KB7 AKLGLKDSQVKIWFQNRRMKWRN-SKEREL-LSSGGCREQTLPTKLNPHPDLSDVGQKGP
:.::: ..:::::::::: :... :. :. : . ... . : : : :.....
NP_005 AQLGLTQTQVKIWFQNRRSKFKKLYKNGEVPLEHSPNNSDSMACNSPPSPALWDTSSHST
170 180 190 200 210 220
280 290 300 310
pF1KB7 GNEEEEEGPGSPSHRLAYHASSDPQHLRDPR--------LPGP----LPPSPA--HSSSP
. . : : : : :: :..: :: : :: ::.:: : .::
NP_005 PAPARSQLP-PP---LPYSAS--PSYLDDPTNSWYHAQNLSGPHLQQQPPQPATLHHASP
230 240 250 260 270
320 330 340
pF1KB7 GKPSDFSDSEEEEEGEEQEEITVS
: : .
NP_005 GPPPNPGAVY
280
343 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:39:07 2016 done: Sun Nov 6 04:39:09 2016
Total Scan time: 9.710 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]