FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7933, 367 aa
  1>>>pF1KB7933 367 - 367 aa - 367 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 11.5093+/-0.000925; mu= -7.3358+/- 0.056
 mean_var=463.5371+/-96.846, 0's: 0 Z-trim(118.5): 86  B-trim: 1169 in 1/53
 Lambda= 0.059571
 statistics sampled from 19388 (19481) to 19388 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.84), E-opt: 0.2 (0.598), width:  16
 Scan time:  3.860

The best scores are:                                      opt bits E(32554)
CCDS3607.1 1 gene_id:4825|Hs108|chr4               ( 367) 2428 222.1 6.2e-58
CCDS7670.1 2 gene_id:84504|Hs108|chr10             ( 277)  964 96.1 3.8e-20


>>CCDS3607.1 1 gene_id:4825|Hs108|chr4                    (367 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1153.6  bits: 222.1 E(32554): 6.2e-58
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)

               10        20        30        40        50        60
pF1KB7 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS36 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSSGGGGGLLLHA
              310       320       330       340       350       360

              
pF1KB7 SEPESSS
       :::::::
CCDS36 SEPESSS
              

>>CCDS7670.1 2 gene_id:84504|Hs108|chr10                  (277 aa)
 initn: 1059 init1: 694 opt: 964  Z-score: 475.1  bits: 96.1 E(32554): 3.8e-20
Smith-Waterman score: 1070; 55.1% identity (67.4% similar) in 356 aa overlap (7-355:1-274)

               10        20        30        40        50        60
pF1KB7 MLAVGAMEGTRQSAFLLSSPPLAALHSMAEMKTPLYPAAYPPLPAGPPSSSSSSSSSSSP
             :. .: .::.::: ::::::.:::::: :.: :                     
CCDS76       MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYAL--------------------
                     10        20        30                        

               70        80        90       100       110       120
pF1KB7 SPPLGTHNPGGLKPPATGGLSSLGSPPQQLSAATPHGINDILSRPSMPVASGAALPSASP
             ..:.:.: :: :::..      ::  .:::::.:::.::      :::      
CCDS76 ------QGPAGFKAPALGGLGA------QLPLGTPHGISDILGRPV-----GAA------
                 40        50              60             70       

              130       140       150       160       170       180
pF1KB7 SGSSSSSSSSASASSASAAAAAAAAAAAAASSPAGLLAGLPRFSSLSPPPPPPGLYFSPS
        :.                               :::.::::...:.      :.::.: 
CCDS76 -GG-------------------------------GLLGGLPRLNGLASSA---GVYFGP-
                                              80           90      

              190       200       210       220       230       240
pF1KB7 AAAVAAVGRYPKPLAELPGRTPIFWPGVMQSPPWRDARLACTPHQGSILLDKDGKRKHTR
       :::::  : ::::::::::: :::::::.:. :::: :::     :..: :::::.::.:
CCDS76 AAAVAR-G-YPKPLAELPGRPPIFWPGVVQGAPWRDPRLAGPAPAGGVL-DKDGKKKHSR
         100         110       120       130       140        150  

              250       260       270       280       290       300
pF1KB7 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKKHAAEMA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::.::.:::
CCDS76 PTFSGQQIFALEKTFEQTKYLAGPERARLAYSLGMTESQVKVWFQNRRTKWRKRHAVEMA
            160       170       180       190       200       210  

              310       320       330       340       350          
pF1KB7 TAKKKQDSETERLKGASENEEEDDDYNKPLDPNSDDEKITQLLKKHKSSS-------GGG
       .:::::::..:.:: .. . :.::.::.::::::::::::.:::::: :.       :::
CCDS76 SAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDPNSDDEKITRLLKKHKPSNLALVSPCGGG
            220       230       240       250       260       270  

           360       
pF1KB7 GGLLLHASEPESSS
       .:            
CCDS76 AGDAL         
                     




367 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:50:12 2016 done: Mon Nov  7 17:50:13 2016
 Total Scan time:  3.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]