Result of FASTA (omim) for
pFN21AB7903
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7903, 107 aa
1>>>pF1KB7903 107 - 107 aa - 107 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.3470+/-0.000243; mu= -2.1622+/- 0.015
mean_var=178.7186+/-35.427, 0's: 0 Z-trim(126.5): 17 B-trim: 81 in 1/60
Lambda= 0.095938
statistics sampled from 52759 (52778) to 52759 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.88), E-opt: 0.2 (0.619), width: 16
Scan time: 5.440
The best scores are: opt bits E(85289)
NP_665906 (OMIM: 125853,600701) high mobility grou ( 107) 704 107.3 4.7e-24
NP_001306007 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24
NP_001306008 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24
NP_665908 (OMIM: 125853,600701) high mobility grou ( 107) 704 107.3 4.7e-24
NP_001306010 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24
NP_001306011 (OMIM: 125853,600701) high mobility g ( 107) 704 107.3 4.7e-24
NP_001306009 (OMIM: 125853,600701) high mobility g ( 106) 686 104.9 2.6e-23
NP_665910 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12
NP_665909 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12
NP_665912 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12
NP_001306006 (OMIM: 125853,600701) high mobility g ( 96) 417 67.6 3.9e-12
NP_002122 (OMIM: 125853,600701) high mobility grou ( 96) 417 67.6 3.9e-12
NP_003474 (OMIM: 150699,600698) high mobility grou ( 109) 211 39.1 0.0017
NP_001317119 (OMIM: 150699,600698) high mobility g ( 90) 205 38.2 0.0025
NP_001287847 (OMIM: 150699,600698) high mobility g ( 118) 201 37.8 0.0046
NP_003475 (OMIM: 150699,600698) high mobility grou ( 106) 200 37.6 0.0047
NP_001287848 (OMIM: 150699,600698) high mobility g ( 147) 200 37.7 0.0061
>>NP_665906 (OMIM: 125853,600701) high mobility group pr (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_001306007 (OMIM: 125853,600701) high mobility group (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_001306008 (OMIM: 125853,600701) high mobility group (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_665908 (OMIM: 125853,600701) high mobility group pr (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_001306010 (OMIM: 125853,600701) high mobility group (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_001306011 (OMIM: 125853,600701) high mobility group (107 aa)
initn: 704 init1: 704 opt: 704 Z-score: 552.8 bits: 107.3 E(85289): 4.7e-24
Smith-Waterman score: 704; 100.0% identity (100.0% similar) in 107 aa overlap (1-107:1-107)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
10 20 30 40 50 60
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
70 80 90 100
>>NP_001306009 (OMIM: 125853,600701) high mobility group (106 aa)
initn: 406 init1: 406 opt: 686 Z-score: 539.4 bits: 104.9 E(85289): 2.6e-23
Smith-Waterman score: 686; 99.1% identity (99.1% similar) in 107 aa overlap (1-107:1-106)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::::
NP_001 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQ-EPSEVPTPKRPRGR
10 20 30 40 50
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
60 70 80 90 100
>>NP_665910 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12
Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
:::::::::::::::::::::::::::::::::: :::::::::::::::
NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR
10 20 30 40
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
50 60 70 80 90
>>NP_665909 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12
Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
:::::::::::::::::::::::::::::::::: :::::::::::::::
NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR
10 20 30 40
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
50 60 70 80 90
>>NP_665912 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 410 init1: 410 opt: 417 Z-score: 338.8 bits: 67.6 E(85289): 3.9e-12
Smith-Waterman score: 604; 89.7% identity (89.7% similar) in 107 aa overlap (1-107:1-96)
10 20 30 40 50 60
pF1KB7 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPPVSPGTALVGSQKEPSEVPTPKRPRGR
:::::::::::::::::::::::::::::::::: :::::::::::::::
NP_665 MSESSSKSSQPLASKQEKDGTEKRGRGRPRKQPP-----------KEPSEVPTPKRPRGR
10 20 30 40
70 80 90 100
pF1KB7 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
:::::::::::::::::::::::::::::::::::::::::::::::
NP_665 PKGSKNKGAAKTRKTTTTPGRKPRGRPKKLEKEEEEGISQESSEEEQ
50 60 70 80 90
107 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 02:06:31 2016 done: Mon Nov 7 02:06:32 2016
Total Scan time: 5.440 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]