Result of FASTA (omim) for
pFN21AB7901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7901, 109 aa
1>>>pF1KB7901 109 - 109 aa - 109 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.4728+/-0.000277; mu= -0.4566+/- 0.017
mean_var=231.6609+/-46.062, 0's: 0 Z-trim(126.4): 20 B-trim: 2866 in 1/58
Lambda= 0.084265
statistics sampled from 52437 (52459) to 52437 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.87), E-opt: 0.2 (0.615), width: 16
Scan time: 4.830
The best scores are: opt bits E(85289)
NP_003474 (OMIM: 150699,600698) high mobility grou ( 109) 745 100.9 4.4e-22
NP_001287847 (OMIM: 150699,600698) high mobility g ( 118) 658 90.3 7.1e-19
NP_003475 (OMIM: 150699,600698) high mobility grou ( 106) 588 81.8 2.4e-16
NP_001317119 (OMIM: 150699,600698) high mobility g ( 90) 584 81.2 3e-16
NP_001287848 (OMIM: 150699,600698) high mobility g ( 147) 583 81.3 4.6e-16
NP_665909 (OMIM: 125853,600701) high mobility grou ( 96) 274 43.6 6.9e-05
NP_001306006 (OMIM: 125853,600701) high mobility g ( 96) 274 43.6 6.9e-05
NP_665912 (OMIM: 125853,600701) high mobility grou ( 96) 274 43.6 6.9e-05
NP_665910 (OMIM: 125853,600701) high mobility grou ( 96) 274 43.6 6.9e-05
NP_002122 (OMIM: 125853,600701) high mobility grou ( 96) 274 43.6 6.9e-05
>>NP_003474 (OMIM: 150699,600698) high mobility group pr (109 aa)
initn: 745 init1: 745 opt: 745 Z-score: 517.4 bits: 100.9 E(85289): 4.4e-22
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)
10 20 30 40 50 60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
10 20 30 40 50 60
70 80 90 100
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
70 80 90 100
>>NP_001287847 (OMIM: 150699,600698) high mobility group (118 aa)
initn: 658 init1: 658 opt: 658 Z-score: 459.8 bits: 90.3 E(85289): 7.1e-19
Smith-Waterman score: 658; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)
10 20 30 40 50 60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
10 20 30 40 50 60
70 80 90 100
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
::::::::::::::::::::::::::::::::::
NP_001 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQVNVALPGKDHPGNLIYLLFSKNAT
70 80 90 100 110
>>NP_003475 (OMIM: 150699,600698) high mobility group pr (106 aa)
initn: 583 init1: 583 opt: 588 Z-score: 414.5 bits: 81.8 E(85289): 2.4e-16
Smith-Waterman score: 588; 81.0% identity (91.4% similar) in 105 aa overlap (1-105:1-105)
10 20 30 40 50 60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
10 20 30 40 50 60
70 80 90 100
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
::::::::::::::::::::::: . . . . .. . .:...:
NP_003 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH
70 80 90 100
>>NP_001317119 (OMIM: 150699,600698) high mobility group (90 aa)
initn: 655 init1: 584 opt: 584 Z-score: 412.7 bits: 81.2 E(85289): 3e-16
Smith-Waterman score: 584; 97.6% identity (98.8% similar) in 85 aa overlap (1-85:1-85)
10 20 30 40 50 60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
10 20 30 40 50 60
70 80 90 100
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
::::::::::::::::::::::: .
NP_001 SKAAQKKAEATGEKRPRGRPRKWEEFYIAA
70 80 90
>>NP_001287848 (OMIM: 150699,600698) high mobility group (147 aa)
initn: 583 init1: 583 opt: 583 Z-score: 409.3 bits: 81.3 E(85289): 4.6e-16
Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)
10 20 30 40 50 60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
10 20 30 40 50 60
70 80 90 100
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
:::::::::::::::::::::::
NP_001 SKAAQKKAEATGEKRPRGRPRKWAGVQWYNLGSLQPPPPRFKQFSCLRLLSSWDYRHPPP
70 80 90 100 110 120
>>NP_665909 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 278 init1: 139 opt: 274 Z-score: 208.7 bits: 43.6 E(85289): 6.9e-05
Smith-Waterman score: 284; 46.4% identity (68.2% similar) in 110 aa overlap (1-109:1-95)
10 20 30 40 50
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS
:: . ..:: .: : . .. .:::::::::: .::. :.::::::::::::::.
NP_665 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG
10 20 30 40 50
60 70 80 90 100
pF1KB7 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
.:. .:. .: ..:::::.: ..: :: ::::.::.
NP_665 AAKT--RKTTTTPGRKPRGRPKKL----------EKEEEEGISQESSEEEQ
60 70 80 90
>>NP_001306006 (OMIM: 125853,600701) high mobility group (96 aa)
initn: 278 init1: 139 opt: 274 Z-score: 208.7 bits: 43.6 E(85289): 6.9e-05
Smith-Waterman score: 284; 46.4% identity (68.2% similar) in 110 aa overlap (1-109:1-95)
10 20 30 40 50
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS
:: . ..:: .: : . .. .:::::::::: .::. :.::::::::::::::.
NP_001 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG
10 20 30 40 50
60 70 80 90 100
pF1KB7 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
.:. .:. .: ..:::::.: ..: :: ::::.::.
NP_001 AAKT--RKTTTTPGRKPRGRPKKL----------EKEEEEGISQESSEEEQ
60 70 80 90
>>NP_665912 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 278 init1: 139 opt: 274 Z-score: 208.7 bits: 43.6 E(85289): 6.9e-05
Smith-Waterman score: 284; 46.4% identity (68.2% similar) in 110 aa overlap (1-109:1-95)
10 20 30 40 50
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS
:: . ..:: .: : . .. .:::::::::: .::. :.::::::::::::::.
NP_665 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG
10 20 30 40 50
60 70 80 90 100
pF1KB7 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
.:. .:. .: ..:::::.: ..: :: ::::.::.
NP_665 AAKT--RKTTTTPGRKPRGRPKKL----------EKEEEEGISQESSEEEQ
60 70 80 90
>>NP_665910 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 278 init1: 139 opt: 274 Z-score: 208.7 bits: 43.6 E(85289): 6.9e-05
Smith-Waterman score: 284; 46.4% identity (68.2% similar) in 110 aa overlap (1-109:1-95)
10 20 30 40 50
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS
:: . ..:: .: : . .. .:::::::::: .::. :.::::::::::::::.
NP_665 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG
10 20 30 40 50
60 70 80 90 100
pF1KB7 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
.:. .:. .: ..:::::.: ..: :: ::::.::.
NP_665 AAKT--RKTTTTPGRKPRGRPKKL----------EKEEEEGISQESSEEEQ
60 70 80 90
>>NP_002122 (OMIM: 125853,600701) high mobility group pr (96 aa)
initn: 278 init1: 139 opt: 274 Z-score: 208.7 bits: 43.6 E(85289): 6.9e-05
Smith-Waterman score: 284; 46.4% identity (68.2% similar) in 110 aa overlap (1-109:1-95)
10 20 30 40 50
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQ-QEPTGEPSPKRPRGRPKGSKNKS
:: . ..:: .: : . .. .:::::::::: .::. :.::::::::::::::.
NP_002 MSESSSKSSQPLASKQEKDGT---EKRGRGRPRKQPPKEPSEVPTPKRPRGRPKGSKNKG
10 20 30 40 50
60 70 80 90 100
pF1KB7 PSKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
.:. .:. .: ..:::::.: ..: :: ::::.::.
NP_002 AAKT--RKTTTTPGRKPRGRPKKL----------EKEEEEGISQESSEEEQ
60 70 80 90
109 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 12:28:59 2016 done: Sun Nov 6 12:29:00 2016
Total Scan time: 4.830 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]