FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7901, 109 aa
  1>>>pF1KB7901 109 - 109 aa - 109 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3336+/-0.000722; mu= 0.9092+/- 0.044
 mean_var=235.3462+/-46.561, 0's: 0 Z-trim(118.7): 11  B-trim: 10 in 1/50
 Lambda= 0.083603
 statistics sampled from 19753 (19763) to 19753 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.607), width:  16
 Scan time:  1.820

The best scores are:                                      opt bits E(32554)
CCDS44936.1 HMGA2 gene_id:8091|Hs108|chr12         ( 109)  745 100.1 2.8e-22
CCDS73492.1 HMGA2 gene_id:8091|Hs108|chr12         ( 118)  658 89.7 4.3e-19
CCDS31854.1 HMGA2 gene_id:8091|Hs108|chr12         ( 106)  588 81.2 1.4e-16
CCDS81709.1 HMGA2 gene_id:8091|Hs108|chr12         (  90)  584 80.6 1.7e-16
CCDS73491.1 HMGA2 gene_id:8091|Hs108|chr12         ( 147)  583 80.7 2.6e-16


>>CCDS44936.1 HMGA2 gene_id:8091|Hs108|chr12              (109 aa)
 initn: 745 init1: 745 opt: 745  Z-score: 513.4  bits: 100.1 E(32554): 2.8e-22
Smith-Waterman score: 745; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109)

               10        20        30        40        50        60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
               70        80        90       100         

>>CCDS73492.1 HMGA2 gene_id:8091|Hs108|chr12              (118 aa)
 initn: 658 init1: 658 opt: 658  Z-score: 456.3  bits: 89.7 E(32554): 4.3e-19
Smith-Waterman score: 658; 100.0% identity (100.0% similar) in 94 aa overlap (1-94:1-94)

               10        20        30        40        50        60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
               10        20        30        40        50        60

               70        80        90       100                  
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED         
       ::::::::::::::::::::::::::::::::::                        
CCDS73 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQVNVALPGKDHPGNLIYLLFSKNAT
               70        80        90       100       110        

>>CCDS31854.1 HMGA2 gene_id:8091|Hs108|chr12              (106 aa)
 initn: 583 init1: 583 opt: 588  Z-score: 411.3  bits: 81.2 E(32554): 1.4e-16
Smith-Waterman score: 588; 81.0% identity (91.4% similar) in 105 aa overlap (1-105:1-105)

               10        20        30        40        50        60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
       ::::::::::::::::::::::: . . . .  .. .  .:...:    
CCDS31 SKAAQKKAEATGEKRPRGRPRKWDNLLPRTSSKKKTSLGNSTKRSH   
               70        80        90       100         

>>CCDS81709.1 HMGA2 gene_id:8091|Hs108|chr12              (90 aa)
 initn: 655 init1: 584 opt: 584  Z-score: 409.5  bits: 80.6 E(32554): 1.7e-16
Smith-Waterman score: 584; 97.6% identity (98.8% similar) in 85 aa overlap (1-85:1-85)

               10        20        30        40        50        60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
               10        20        30        40        50        60

               70        80        90       100         
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED
       ::::::::::::::::::::::: .                        
CCDS81 SKAAQKKAEATGEKRPRGRPRKWEEFYIAA                   
               70        80        90                   

>>CCDS73491.1 HMGA2 gene_id:8091|Hs108|chr12              (147 aa)
 initn: 583 init1: 583 opt: 583  Z-score: 406.2  bits: 80.7 E(32554): 2.6e-16
Smith-Waterman score: 583; 100.0% identity (100.0% similar) in 83 aa overlap (1-83:1-83)

               10        20        30        40        50        60
pF1KB7 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MSARGEGAGQPSTSAQGQPAAPAPQKRGRGRPRKQQQEPTGEPSPKRPRGRPKGSKNKSP
               10        20        30        40        50        60

               70        80        90       100                    
pF1KB7 SKAAQKKAEATGEKRPRGRPRKWPQQVVQKKPAQEETEETSSQESAEED           
       :::::::::::::::::::::::                                     
CCDS73 SKAAQKKAEATGEKRPRGRPRKWAGVQWYNLGSLQPPPPRFKQFSCLRLLSSWDYRHPPP
               70        80        90       100       110       120




109 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:28:58 2016 done: Sun Nov  6 12:28:59 2016
 Total Scan time:  1.820 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]