Result of FASTA (omim) for
pFN21AB7877
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7877, 571 aa
1>>>pF1KB7877 571 - 571 aa - 571 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.3496+/-0.000434; mu= 1.4219+/- 0.027
mean_var=346.6665+/-74.034, 0's: 0 Z-trim(121.9): 1809 B-trim: 1674 in 1/56
Lambda= 0.068884
statistics sampled from 37091 (39278) to 37091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.781), E-opt: 0.2 (0.461), width: 16
Scan time: 10.540
The best scores are: opt bits E(85289)
NP_078780 (OMIM: 611781) PR domain zinc finger pro ( 571) 4100 421.7 3.2e-117
XP_011515874 (OMIM: 611781) PREDICTED: PR domain z ( 316) 2294 241.9 2.3e-63
XP_005268650 (OMIM: 605780) PREDICTED: PR domain z ( 808) 578 71.8 9.3e-12
NP_036538 (OMIM: 605780) PR domain zinc finger pro ( 801) 576 71.6 1.1e-11
NP_068735 (OMIM: 194544) zinc finger protein 70 [H ( 446) 495 63.3 1.9e-09
NP_001092753 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_005665 (OMIM: 601069) zinc finger protein 239 i ( 458) 494 63.2 2.1e-09
NP_001311276 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_001092754 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_001311277 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_001311278 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
XP_005271889 (OMIM: 601069) PREDICTED: zinc finger ( 458) 494 63.2 2.1e-09
NP_001311279 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_001092752 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
NP_001311280 (OMIM: 601069) zinc finger protein 23 ( 458) 494 63.2 2.1e-09
XP_011538540 (OMIM: 601069) PREDICTED: zinc finger ( 458) 494 63.2 2.1e-09
XP_006718066 (OMIM: 601069) PREDICTED: zinc finger ( 458) 494 63.2 2.1e-09
XP_006718064 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
XP_011538537 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
XP_011538536 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
XP_011538539 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
XP_011538538 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
XP_016872229 (OMIM: 601069) PREDICTED: zinc finger ( 500) 494 63.3 2.2e-09
NP_001311281 (OMIM: 601069) zinc finger protein 23 ( 500) 494 63.3 2.2e-09
NP_001311282 (OMIM: 601069) zinc finger protein 23 ( 571) 494 63.3 2.4e-09
XP_011538534 (OMIM: 601069) PREDICTED: zinc finger ( 602) 494 63.3 2.5e-09
NP_001252529 (OMIM: 601856) zinc finger protein 21 ( 503) 492 63.1 2.6e-09
NP_001252528 (OMIM: 601856) zinc finger protein 21 ( 555) 492 63.1 2.7e-09
NP_942152 (OMIM: 601856) zinc finger protein 211 i ( 564) 492 63.1 2.7e-09
XP_011526568 (OMIM: 603971) PREDICTED: zinc finger (1092) 498 64.1 2.8e-09
XP_006722943 (OMIM: 603971) PREDICTED: zinc finger (1092) 498 64.1 2.8e-09
NP_006376 (OMIM: 601856) zinc finger protein 211 i ( 577) 492 63.1 2.8e-09
XP_016882725 (OMIM: 603971) PREDICTED: zinc finger (1118) 498 64.1 2.8e-09
XP_011526567 (OMIM: 603971) PREDICTED: zinc finger (1150) 498 64.1 2.9e-09
XP_016882724 (OMIM: 603971) PREDICTED: zinc finger (1150) 498 64.1 2.9e-09
NP_001287880 (OMIM: 603971) zinc finger protein 91 (1159) 498 64.1 2.9e-09
NP_001252527 (OMIM: 601856) zinc finger protein 21 ( 616) 492 63.2 2.9e-09
NP_003421 (OMIM: 603971) zinc finger protein 91 is (1191) 498 64.1 2.9e-09
NP_001309235 (OMIM: 601856) zinc finger protein 21 ( 627) 492 63.2 2.9e-09
NP_001252526 (OMIM: 601856) zinc finger protein 21 ( 629) 492 63.2 2.9e-09
XP_005259469 (OMIM: 604749) PREDICTED: zinc finger ( 734) 493 63.3 3e-09
NP_004225 (OMIM: 604749) zinc finger protein 235 [ ( 738) 493 63.4 3.1e-09
XP_016882236 (OMIM: 165260) PREDICTED: zinc finger ( 327) 484 62.0 3.4e-09
XP_011525220 (OMIM: 165260) PREDICTED: zinc finger ( 327) 484 62.0 3.4e-09
XP_011525219 (OMIM: 165260) PREDICTED: zinc finger ( 491) 484 62.2 4.4e-09
NP_001308045 (OMIM: 165260) zinc finger and SCAN d ( 491) 484 62.2 4.4e-09
XP_006723255 (OMIM: 165260) PREDICTED: zinc finger ( 491) 484 62.2 4.4e-09
NP_862829 (OMIM: 165260) zinc finger and SCAN doma ( 491) 484 62.2 4.4e-09
NP_001273984 (OMIM: 601260) zinc finger protein wi ( 350) 480 61.7 4.6e-09
XP_016878355 (OMIM: 604752) PREDICTED: zinc finger ( 487) 483 62.1 4.7e-09
>>NP_078780 (OMIM: 611781) PR domain zinc finger protein (571 aa)
initn: 4100 init1: 4100 opt: 4100 Z-score: 2225.5 bits: 421.7 E(85289): 3.2e-117
Smith-Waterman score: 4100; 99.8% identity (100.0% similar) in 571 aa overlap (1-571:1-571)
10 20 30 40 50 60
pF1KB7 MALPRPSEAVPQDKVCYPPESSPQNLAAYYTPFPSYGHYRNSLATVEEDFQPFRQLEAAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 MALPRPSEAVPQDKVCYPPESSPQNLAAYYTPFPSYGHYRNSLATVEEDFQPFRQLEAAA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SAAPAMPPFPFRMAPPLLSPGLGLQREPLYDLPWYSKLPPWYPIPHVPREVPPFLSSSHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 SAAPAMPPFPFRMAPPLLSPGLGLQREPLYDLPWYSKLPPWYPIPHVPREVPPFLSSSHE
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 YAGASSEDLGHQIIGGDNESGPCCGPDTLIPPPPADASLLPEGLRTSQLLPCSPSKQSED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YAGASSEDLGHQIIGGDNESGPCCGPDTLIPPPPADASLLPEGLRTSQLLPCSPSKQSED
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 GPKPSNQEGKSPARFQFTEEDLHFVLYGVTPSLEHPASLHHAISGLLVPPDSSGSDSLPQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 GPKPSNQEGKSPARFQFTEEDLHFVLYGVTPSLEHPASLHHAISGLLVPPDSSGSDSLPQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 TLDEDSLQLPEGLCLMQTVFGEVPHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYGDNS
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 TLDKDSLQLPEGLCLMQTVFGEVPHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYGDNS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VMWEIFEDGHLSHFIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 VMWEIFEDGHLSHFIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 ELLVWYGDCYEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 ELLVWYGDCYEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLK
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 YTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 YTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHM
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 RVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_078 RVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSH
490 500 510 520 530 540
550 560 570
pF1KB7 KEDDGCSCSICGKIFSDQETFYSHMKFHEDY
:::::::::::::::::::::::::::::::
NP_078 KEDDGCSCSICGKIFSDQETFYSHMKFHEDY
550 560 570
>>XP_011515874 (OMIM: 611781) PREDICTED: PR domain zinc (316 aa)
initn: 2294 init1: 2294 opt: 2294 Z-score: 1258.5 bits: 241.9 E(85289): 2.3e-63
Smith-Waterman score: 2294; 100.0% identity (100.0% similar) in 316 aa overlap (256-571:1-316)
230 240 250 260 270 280
pF1KB7 LLVPPDSSGSDSLPQTLDEDSLQLPEGLCLMQTVFGEVPHFGVFCSSFIAKGVRFGPFQG
::::::::::::::::::::::::::::::
XP_011 MQTVFGEVPHFGVFCSSFIAKGVRFGPFQG
10 20 30
290 300 310 320 330 340
pF1KB7 KVVNASEVKTYGDNSVMWEIFEDGHLSHFIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KVVNASEVKTYGDNSVMWEIFEDGHLSHFIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQ
40 50 60 70 80 90
350 360 370 380 390 400
pF1KB7 GHIFYESCKEIHQNQELLVWYGDCYEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GHIFYESCKEIHQNQELLVWYGDCYEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERC
100 110 120 130 140 150
410 420 430 440 450 460
pF1KB7 GKVFTYKYYRDKHLKYTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GKVFTYKYYRDKHLKYTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCST
160 170 180 190 200 210
470 480 490 500 510 520
pF1KB7 CGKCFSQSSSLNKHMRVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CGKCFSQSSSLNKHMRVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKS
220 230 240 250 260 270
530 540 550 560 570
pF1KB7 FASHAAHDSHVRRSHKEDDGCSCSICGKIFSDQETFYSHMKFHEDY
::::::::::::::::::::::::::::::::::::::::::::::
XP_011 FASHAAHDSHVRRSHKEDDGCSCSICGKIFSDQETFYSHMKFHEDY
280 290 300 310
>>XP_005268650 (OMIM: 605780) PREDICTED: PR domain zinc (808 aa)
initn: 444 init1: 266 opt: 578 Z-score: 332.1 bits: 71.8 E(85289): 9.3e-12
Smith-Waterman score: 578; 30.4% identity (60.5% similar) in 352 aa overlap (230-569:389-732)
200 210 220 230 240 250
pF1KB7 EDLHFVLYGVTPSLEHPASLHHAISGLLVPPDSSGSDSLPQTLDEDS--LQLPEGLCLMQ
:. . .:.: :. :.::. : : :
XP_005 MEDSNSNKENMATLFTIWCTLCDRAYPSDCPEHGPVTFVPDTPIESRARLSLPKQLVLRQ
360 370 380 390 400 410
260 270 280 290 300 310
pF1KB7 TVFG-EV----PHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYGDNSV--MWEIFEDGH
.. : :: : ::. . : . :::. :. .. :: . :..: .:.:...:
XP_005 SIVGAEVVGVLPLTGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGV
420 430 440 450 460 470
320 330 340 350 360
pF1KB7 LSH-FIDGKGGTGNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQELLVWYGDC
: .: . ::: .: :: .:::::: .:.::. . ..: ..::: .:.
XP_005 LEFCIITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRD
480 490 500 510 520 530
370 380 390 400 410 420
pF1KB7 YEKFLDIPV--SLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDK
: . . .: .... . ::. .. .: .. . ... .. . . .. : .:
XP_005 YAQQIGVPEHPDVHLCNCGKECNSYTE-----FKAHLTSHIHNHLPTQGHSGSHGPSHSK
540 550 560 570 580 590
430 440 450 460 470 480
pF1KB7 GDRKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDR
.::. ::.: ..: . ..:..:.. : .::::. :.: ::. :.: :...:.:..
XP_005 -ERKWKCSMCPQAFISPSKLHVHFMG-HMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQK
600 610 620 630 640 650
490 500 510 520 530 540
pF1KB7 PYQCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCS
:.:. : : :: .. :..:. :.::: .:: :: : : . .:: : .. .
XP_005 NYRCTLCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVL-IHTQERQIK
660 670 680 690 700 710
550 560 570
pF1KB7 CSICGKIFSDQETFYSHMKFHEDY
: : :.: . . .:.. ::
XP_005 CPKCDKLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAPE
720 730 740 750 760 770
>>NP_036538 (OMIM: 605780) PR domain zinc finger protein (801 aa)
initn: 444 init1: 266 opt: 576 Z-score: 331.1 bits: 71.6 E(85289): 1.1e-11
Smith-Waterman score: 576; 30.0% identity (60.8% similar) in 347 aa overlap (230-569:389-725)
200 210 220 230 240 250
pF1KB7 EDLHFVLYGVTPSLEHPASLHHAISGLLVPPDSSGSDSLPQTLDEDS--LQLPEGLCLMQ
:. . .:.: :. :.::. : : :
NP_036 MEDSNSNKENMATLFTIWCTLCDRAYPSDCPEHGPVTFVPDTPIESRARLSLPKQLVLRQ
360 370 380 390 400 410
260 270 280 290 300 310
pF1KB7 TVFGEVPHFGVFCSSFIAKGVRFGPFQGKVVNASEVKTYGDNSV--MWEIFEDGHLSH-F
.. : . ::. . : . :::. :. .. :: . :..: .:.:...: : .
NP_036 SIVGA--EVGVWTGETIPVRTCFGPLIGQQSHSMEVAEWTDKAVNHIWKIYHNGVLEFCI
420 430 440 450 460 470
320 330 340 350 360 370
pF1KB7 IDGKGGTGNWMSYVNCARFPKEQNLVAVQCQGHIFYESCKEIHQNQELLVWYGDCYEKFL
: . ::: .: :: .:::::: .:.::. . ..: ..::: .:. : . .
NP_036 ITTDENECNWMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYAQQI
480 490 500 510 520 530
380 390 400 410 420 430
pF1KB7 DIPV--SLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGDRKF
.: .... . ::. .. .: .. . ... .. . . .. : .: .::.
NP_036 GVPEHPDVHLCNCGKECNSYTE-----FKAHLTSHIHNHLPTQGHSGSHGPSHSK-ERKW
540 550 560 570 580 590
440 450 460 470 480 490
pF1KB7 PCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPYQCV
::.: ..: . ..:..:.. : .::::. :.: ::. :.: :...:.:.. :.:.
NP_036 KCSMCPQAFISPSKLHVHFMG-HMGMKPHKCDFCSKAFSDPSNLRTHLKIHTGQKNYRCT
600 610 620 630 640
500 510 520 530 540 550
pF1KB7 YCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCSICG
: : :: .. :..:. :.::: .:: :: : : . .:: : .. .: :
NP_036 LCDKSFTQKAHLESHMVIHTGEKNLKCDYCDKLFMRRQDLKQHVL-IHTQERQIKCPKCD
650 660 670 680 690 700
560 570
pF1KB7 KIFSDQETFYSHMKFHEDY
:.: . . .:.. ::
NP_036 KLFLRTNHLKKHLNSHEGKRDYVCEKCTKAYLTKYHLTRHLKTCKGPTSSSSAPEEEEED
710 720 730 740 750 760
>>NP_068735 (OMIM: 194544) zinc finger protein 70 [Homo (446 aa)
initn: 1705 init1: 288 opt: 495 Z-score: 290.5 bits: 63.3 E(85289): 1.9e-09
Smith-Waterman score: 495; 35.9% identity (62.6% similar) in 198 aa overlap (377-568:112-302)
350 360 370 380 390 400
pF1KB7 HIFYESCKEIHQNQELLVWYGDCYEKFLDIPVSLQVTEPGKQPSGP-----SEESAEGYR
: . .: . ::: . . :. :
NP_068 GTRPQDDELFGQTFLQKSDLSMCQIIHSEEPSPCDCAETDRGDSGPNAPHRTPQPAKPYA
90 100 110 120 130 140
410 420 430 440 450 460
pF1KB7 CERCGKVFTYKYYRDKHLKYTPCVDKGDRKFPCSLCKRSFEKRDRL-RIHILHVHEKHRP
:..:::.:. . . .:: . :.. . : : ..: . ..: : .:.:. :: :
NP_068 CRECGKAFSQSSHLLRHL----VIHTGEKPYECCECGKAFSQSSHLLRHQIIHTGEK--P
150 160 170 180 190
470 480 490 500 510 520
pF1KB7 HKCSTCGKCFSQSSSLNKHMRVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPFKCK
..: ::: : :::.:..:...:.: :::.: : : :. :: :: : : :.::.:..::
NP_068 YECRECGKAFRQSSALTQHQKIHTGKRPYECRECGKDFSRSSSLRKHERIHTGERPYQCK
200 210 220 230 240 250
530 540 550 560 570
pF1KB7 YCGKSFASHAAHDSHVRRSHKEDDGCSCSICGKIFSDQETFYSHMKFHEDY
::::: . .. ..: :. : :..::: : . . :...:
NP_068 ECGKSFNQSSGLSQH-RKIHTLKKPHECDLCGKAFCHRSHLIRHQRIHTGKKPYKCDECG
260 270 280 290 300 310
NP_068 KAFSQSSNLIEHRKTHTGEKPYKCQKCGKAFSQSSSLIEHQRIHTGEKPYECCQCGKAFC
320 330 340 350 360 370
>--
initn: 493 init1: 279 opt: 346 Z-score: 210.5 bits: 48.5 E(85289): 5.5e-05
Smith-Waterman score: 403; 39.0% identity (65.2% similar) in 141 aa overlap (428-568:304-441)
400 410 420 430 440 450
pF1KB7 EGYRCERCGKVFTYKYYRDKHLKYTPCVDKGDRKFPCSLCKRSFEKRDRLRIHILHVHEK
: . . :. : ..: . . : : ..:
NP_068 HTLKKPHECDLCGKAFCHRSHLIRHQRIHTGKKPYKCDECGKAFSQSSNLIEH-RKTHTG
280 290 300 310 320 330
460 470 480 490 500 510
pF1KB7 HRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPYQCVYCTKRFTASSILRTHIRQHSGEKPF
..:.::. ::: ::::::: .:.:.:.:..::.: : : : :: : : : :.:.::.
NP_068 EKPYKCQKCGKAFSQSSSLIEHQRIHTGEKPYECCQCGKAFCHSSALIQHQRIHTGKKPY
340 350 360 370 380 390
520 530 540 550 560 570
pF1KB7 KCKYCGKSFASHAAHDSHVRRSHKEDDGCSCSICGKIFSDQETFYSHMKFHEDY
:. :::.: ..: : . .: .. :..::: : . . :.:.:
NP_068 TCE-CGKAFRHRSALIEHYK-THTREKPYVCNLCGKSFRGSSHLIRHQKIHSGEKL
400 410 420 430 440
>>NP_001092753 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 2085 init1: 322 opt: 494 Z-score: 289.8 bits: 63.2 E(85289): 2.1e-09
Smith-Waterman score: 494; 41.2% identity (65.3% similar) in 170 aa overlap (400-569:291-454)
370 380 390 400 410 420
pF1KB7 YEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGD
:.:..::: :. . : . : :.
NP_001 KPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQR----VHTGE
270 280 290 300 310
430 440 450 460 470 480
pF1KB7 RKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPY
. . : : :: .:. :.:: .:: .::.::. ::: :::::.:. : .:.:..::
NP_001 KPYECEECGMSFSQRSNLHIH-QRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPY
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS
:: : : :. :: :: :.: :.::::..: :::.:.. . : .: : . ::
NP_001 QCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIH-QRVHTGEKPYECS
380 390 400 410 420 430
550 560 570
pF1KB7 ICGKIFSDQETFYSHMKFHEDY
::: ::.. ... :.. :.
NP_001 KCGKGFSQSSNLHIHQRVHKKDPR
440 450
>>NP_005665 (OMIM: 601069) zinc finger protein 239 isofo (458 aa)
initn: 2085 init1: 322 opt: 494 Z-score: 289.8 bits: 63.2 E(85289): 2.1e-09
Smith-Waterman score: 494; 41.2% identity (65.3% similar) in 170 aa overlap (400-569:291-454)
370 380 390 400 410 420
pF1KB7 YEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGD
:.:..::: :. . : . : :.
NP_005 KPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQR----VHTGE
270 280 290 300 310
430 440 450 460 470 480
pF1KB7 RKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPY
. . : : :: .:. :.:: .:: .::.::. ::: :::::.:. : .:.:..::
NP_005 KPYECEECGMSFSQRSNLHIH-QRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPY
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS
:: : : :. :: :: :.: :.::::..: :::.:.. . : .: : . ::
NP_005 QCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIH-QRVHTGEKPYECS
380 390 400 410 420 430
550 560 570
pF1KB7 ICGKIFSDQETFYSHMKFHEDY
::: ::.. ... :.. :.
NP_005 KCGKGFSQSSNLHIHQRVHKKDPR
440 450
>>NP_001311276 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 2085 init1: 322 opt: 494 Z-score: 289.8 bits: 63.2 E(85289): 2.1e-09
Smith-Waterman score: 494; 41.2% identity (65.3% similar) in 170 aa overlap (400-569:291-454)
370 380 390 400 410 420
pF1KB7 YEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGD
:.:..::: :. . : . : :.
NP_001 KPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQR----VHTGE
270 280 290 300 310
430 440 450 460 470 480
pF1KB7 RKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPY
. . : : :: .:. :.:: .:: .::.::. ::: :::::.:. : .:.:..::
NP_001 KPYECEECGMSFSQRSNLHIH-QRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPY
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS
:: : : :. :: :: :.: :.::::..: :::.:.. . : .: : . ::
NP_001 QCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIH-QRVHTGEKPYECS
380 390 400 410 420 430
550 560 570
pF1KB7 ICGKIFSDQETFYSHMKFHEDY
::: ::.. ... :.. :.
NP_001 KCGKGFSQSSNLHIHQRVHKKDPR
440 450
>>NP_001092754 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 2085 init1: 322 opt: 494 Z-score: 289.8 bits: 63.2 E(85289): 2.1e-09
Smith-Waterman score: 494; 41.2% identity (65.3% similar) in 170 aa overlap (400-569:291-454)
370 380 390 400 410 420
pF1KB7 YEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGD
:.:..::: :. . : . : :.
NP_001 KPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQR----VHTGE
270 280 290 300 310
430 440 450 460 470 480
pF1KB7 RKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPY
. . : : :: .:. :.:: .:: .::.::. ::: :::::.:. : .:.:..::
NP_001 KPYECEECGMSFSQRSNLHIH-QRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPY
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS
:: : : :. :: :: :.: :.::::..: :::.:.. . : .: : . ::
NP_001 QCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIH-QRVHTGEKPYECS
380 390 400 410 420 430
550 560 570
pF1KB7 ICGKIFSDQETFYSHMKFHEDY
::: ::.. ... :.. :.
NP_001 KCGKGFSQSSNLHIHQRVHKKDPR
440 450
>>NP_001311277 (OMIM: 601069) zinc finger protein 239 is (458 aa)
initn: 2085 init1: 322 opt: 494 Z-score: 289.8 bits: 63.2 E(85289): 2.1e-09
Smith-Waterman score: 494; 41.2% identity (65.3% similar) in 170 aa overlap (400-569:291-454)
370 380 390 400 410 420
pF1KB7 YEKFLDIPVSLQVTEPGKQPSGPSEESAEGYRCERCGKVFTYKYYRDKHLKYTPCVDKGD
:.:..::: :. . : . : :.
NP_001 KPYKCDKCGKGFTRSSSLLIHHAVHTGEKPYKCDKCGKGFSQSSKLHIHQR----VHTGE
270 280 290 300 310
430 440 450 460 470 480
pF1KB7 RKFPCSLCKRSFEKRDRLRIHILHVHEKHRPHKCSTCGKCFSQSSSLNKHMRVHSGDRPY
. . : : :: .:. :.:: .:: .::.::. ::: :::::.:. : .:.:..::
NP_001 KPYECEECGMSFSQRSNLHIH-QRVHTGERPYKCGECGKGFSQSSNLHIHRCIHTGEKPY
320 330 340 350 360 370
490 500 510 520 530 540
pF1KB7 QCVYCTKRFTASSILRTHIRQHSGEKPFKCKYCGKSFASHAAHDSHVRRSHKEDDGCSCS
:: : : :. :: :: :.: :.::::..: :::.:.. . : .: : . ::
NP_001 QCYECGKGFSQSSDLRIHLRVHTGEKPYHCGKCGKGFSQSSKLLIH-QRVHTGEKPYECS
380 390 400 410 420 430
550 560 570
pF1KB7 ICGKIFSDQETFYSHMKFHEDY
::: ::.. ... :.. :.
NP_001 KCGKGFSQSSNLHIHQRVHKKDPR
440 450
571 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Tue Nov 8 05:19:22 2016 done: Tue Nov 8 05:19:23 2016
Total Scan time: 10.540 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]