FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7848, 622 aa
1>>>pF1KB7848 622 - 622 aa - 622 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.8944+/-0.000408; mu= 4.6793+/- 0.025
mean_var=245.8570+/-49.846, 0's: 0 Z-trim(120.6): 12 B-trim: 1912 in 2/50
Lambda= 0.081796
statistics sampled from 36057 (36073) to 36057 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.741), E-opt: 0.2 (0.423), width: 16
Scan time: 12.630
The best scores are: opt bits E(85289)
NP_006464 (OMIM: 602946) TAF6-like RNA polymerase ( 622) 4210 510.1 8.9e-144
XP_005273771 (OMIM: 602946) PREDICTED: TAF6-like R ( 613) 3220 393.3 1.3e-108
XP_016872589 (OMIM: 602946) PREDICTED: TAF6-like R ( 411) 2400 296.4 1.3e-79
XP_016868057 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05
XP_006716164 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05
XP_011514845 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05
XP_006716165 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05
XP_011514844 (OMIM: 602955,617126) PREDICTED: tran ( 667) 320 51.1 1.4e-05
XP_006716163 (OMIM: 602955,617126) PREDICTED: tran ( 677) 320 51.1 1.5e-05
NP_647476 (OMIM: 602955,617126) transcription init ( 677) 320 51.1 1.5e-05
NP_005632 (OMIM: 602955,617126) transcription init ( 677) 320 51.1 1.5e-05
NP_001177344 (OMIM: 602955,617126) transcription i ( 714) 320 51.1 1.5e-05
>>NP_006464 (OMIM: 602946) TAF6-like RNA polymerase II p (622 aa)
initn: 4210 init1: 4210 opt: 4210 Z-score: 2702.2 bits: 510.1 E(85289): 8.9e-144
Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 622 aa overlap (1-622:1-622)
10 20 30 40 50 60
pF1KB7 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB7 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB7 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB7 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB7 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
550 560 570 580 590 600
610 620
pF1KB7 IGRTSRPARRWALSDYSLYLPL
::::::::::::::::::::::
NP_006 IGRTSRPARRWALSDYSLYLPL
610 620
>>XP_005273771 (OMIM: 602946) PREDICTED: TAF6-like RNA p (613 aa)
initn: 3220 init1: 3220 opt: 3220 Z-score: 2070.9 bits: 393.3 E(85289): 1.3e-108
Smith-Waterman score: 4132; 98.6% identity (98.6% similar) in 622 aa overlap (1-622:1-613)
10 20 30 40 50 60
pF1KB7 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_005 GCAETAVRVHVSYLDGKGNLAPQGS---------DDLLKYYHQVTRAVLGDDPQLMKVAL
130 140 150 160 170
190 200 210 220 230 240
pF1KB7 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB7 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
360 370 380 390 400 410
430 440 450 460 470 480
pF1KB7 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
420 430 440 450 460 470
490 500 510 520 530 540
pF1KB7 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
480 490 500 510 520 530
550 560 570 580 590 600
pF1KB7 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
540 550 560 570 580 590
610 620
pF1KB7 IGRTSRPARRWALSDYSLYLPL
::::::::::::::::::::::
XP_005 IGRTSRPARRWALSDYSLYLPL
600 610
>>XP_016872589 (OMIM: 602946) PREDICTED: TAF6-like RNA p (411 aa)
initn: 2395 init1: 2395 opt: 2400 Z-score: 1550.2 bits: 296.4 E(85289): 1.3e-79
Smith-Waterman score: 2400; 93.0% identity (94.8% similar) in 383 aa overlap (241-622:33-411)
220 230 240 250 260
pF1KB7 EQLHRLLQVARSLFRNPHLCLGPYVRCLVGSVLY-CVLEPLAASINPLNDHWTLRDGAAL
:::: : : . . :.. : . . .
XP_016 YKYAKVLVLQPSGPRPVTPGSLLHLTPALPSVLYRCY--SLCVVLCPVGWHHASFPSLTE
10 20 30 40 50 60
270 280 290 300 310 320
pF1KB7 LLSHIFWTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPH
:: :::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 WCSH--RTHGDLVSGLYQHILLSLQKILADPVRPLCCHYGAVVGLHALGWKAVERVLYPH
70 80 90 100 110
330 340 350 360 370 380
pF1KB7 LSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGPGGRGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LSTYWTNLQAVLDDYSVSNAQVKADGHKVYGAILVAVERLLKMKAQAAEPNRGGPGGRGC
120 130 140 150 160 170
390 400 410 420 430 440
pF1KB7 RRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRLDDLPWDSLLFQESSSGGGAEPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFG
180 190 200 210 220 230
450 460 470 480 490 500
pF1KB7 DSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSLATRFGTGQPAPTAPRPPGDKKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGG
240 250 260 270 280 290
510 520 530 540 550 560
pF1KB7 PASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PASASGPAASESRPLPRVHRARGAPRQQGPGTGTRDVFQKSRFAPRGAPHFRFIIAGRQA
300 310 320 330 340 350
570 580 590 600 610 620
pF1KB7 GRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARRWALSDYSLYLPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRRCRGRLFQTAFPAPYGPSPASRYVQKLPMIGRTSRPARRWALSDYSLYLPL
360 370 380 390 400 410
>>XP_016868057 (OMIM: 602955,617126) PREDICTED: transcri (667 aa)
initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05
Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605)
10 20 30 40 50 60
pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL
: . :..: : . ... .::. ::.::
XP_016 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-
:. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_016 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV
60 70 80 90 100 110
130
pF1KB7 --------------GC-----------------AETAVRVH------------------V
:: ::.. .. .
XP_016 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA
120 130 140 150 160 170
140 150 160 170 180
pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD
. ::::. :: : .. :. . ::...:.: .:. :::.
XP_016 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS
180 190 200 210 220 230
190 200 210 220 230
pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV
. :. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_016 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_016 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_016 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS
360 370 380 390 400 410
360 370 380 390 400 410
pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA
. : ..: : . .: . . :. : : .. .: :. .. .
XP_016 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT
420 430 440 450 460 470
420 430 440 450 460 470
pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD
.: : : ::. :.: . ..: . .. . : :: : ::
XP_016 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT
480 490 500 510 520
480 490 500 510 520 530
pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA
: .. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_016 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA
530 540 550 560 570
540 550 560 570 580
pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS
:: . .: : :. . . . : :
XP_016 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ
580 590 600 610 620 630
>>XP_006716164 (OMIM: 602955,617126) PREDICTED: transcri (667 aa)
initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05
Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605)
10 20 30 40 50 60
pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL
: . :..: : . ... .::. ::.::
XP_006 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-
:. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_006 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV
60 70 80 90 100 110
130
pF1KB7 --------------GC-----------------AETAVRVH------------------V
:: ::.. .. .
XP_006 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA
120 130 140 150 160 170
140 150 160 170 180
pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD
. ::::. :: : .. :. . ::...:.: .:. :::.
XP_006 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS
180 190 200 210 220 230
190 200 210 220 230
pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV
. :. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_006 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_006 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_006 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS
360 370 380 390 400 410
360 370 380 390 400 410
pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA
. : ..: : . .: . . :. : : .. .: :. .. .
XP_006 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT
420 430 440 450 460 470
420 430 440 450 460 470
pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD
.: : : ::. :.: . ..: . .. . : :: : ::
XP_006 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT
480 490 500 510 520
480 490 500 510 520 530
pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA
: .. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_006 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA
530 540 550 560 570
540 550 560 570 580
pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS
:: . .: : :. . . . : :
XP_006 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ
580 590 600 610 620 630
>>XP_011514845 (OMIM: 602955,617126) PREDICTED: transcri (667 aa)
initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05
Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605)
10 20 30 40 50 60
pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL
: . :..: : . ... .::. ::.::
XP_011 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-
:. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_011 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV
60 70 80 90 100 110
130
pF1KB7 --------------GC-----------------AETAVRVH------------------V
:: ::.. .. .
XP_011 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA
120 130 140 150 160 170
140 150 160 170 180
pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD
. ::::. :: : .. :. . ::...:.: .:. :::.
XP_011 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS
180 190 200 210 220 230
190 200 210 220 230
pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV
. :. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_011 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_011 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_011 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS
360 370 380 390 400 410
360 370 380 390 400 410
pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA
. : ..: : . .: . . :. : : .. .: :. .. .
XP_011 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT
420 430 440 450 460 470
420 430 440 450 460 470
pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD
.: : : ::. :.: . ..: . .. . : :: : ::
XP_011 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT
480 490 500 510 520
480 490 500 510 520 530
pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA
: .. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_011 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA
530 540 550 560 570
540 550 560 570 580
pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS
:: . .: : :. . . . : :
XP_011 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ
580 590 600 610 620 630
>>XP_006716165 (OMIM: 602955,617126) PREDICTED: transcri (667 aa)
initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05
Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605)
10 20 30 40 50 60
pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL
: . :..: : . ... .::. ::.::
XP_006 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-
:. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_006 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV
60 70 80 90 100 110
130
pF1KB7 --------------GC-----------------AETAVRVH------------------V
:: ::.. .. .
XP_006 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA
120 130 140 150 160 170
140 150 160 170 180
pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD
. ::::. :: : .. :. . ::...:.: .:. :::.
XP_006 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS
180 190 200 210 220 230
190 200 210 220 230
pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV
. :. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_006 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_006 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_006 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS
360 370 380 390 400 410
360 370 380 390 400 410
pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA
. : ..: : . .: . . :. : : .. .: :. .. .
XP_006 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT
420 430 440 450 460 470
420 430 440 450 460 470
pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD
.: : : ::. :.: . ..: . .. . : :: : ::
XP_006 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT
480 490 500 510 520
480 490 500 510 520 530
pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA
: .. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_006 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA
530 540 550 560 570
540 550 560 570 580
pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS
:: . .: : :. . . . : :
XP_006 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ
580 590 600 610 620 630
>>XP_011514844 (OMIM: 602955,617126) PREDICTED: transcri (667 aa)
initn: 454 init1: 211 opt: 320 Z-score: 220.9 bits: 51.1 E(85289): 1.4e-05
Smith-Waterman score: 396; 23.8% identity (50.1% similar) in 597 aa overlap (34-556:29-605)
10 20 30 40 50 60
pF1KB7 REERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKL
: . :..: : . ... .::. ::.::
XP_011 MAEEKKLKLSNTVLPSESMKVVAESMGIAQIQEETCQLLTD--EDALKFMHMGKRQKL
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 TVEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK-
:. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_011 TTSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRV
60 70 80 90 100 110
130
pF1KB7 --------------GC-----------------AETAVRVH------------------V
:: ::.. .. .
XP_011 PLDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGA
120 130 140 150 160 170
140 150 160 170 180
pF1KB7 SYLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQD
. ::::. :: : .. :. . ::...:.: .:. :::.
XP_011 TTADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQS
180 190 200 210 220 230
190 200 210 220 230
pF1KB7 LQTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLV
. :. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_011 IATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELI
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB7 GSVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILAD
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_011 PAVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVD
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB7 PVRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_011 EKTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQS
360 370 380 390 400 410
360 370 380 390 400 410
pF1KB7 ----YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGA
. : ..: : . .: . . :. : : .. .: :. .. .
XP_011 LLLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTIT
420 430 440 450 460 470
420 430 440 450 460 470
pF1KB7 EPSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGD
.: : : ::. :.: . ..: . .. . : :: : ::
XP_011 QPRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPT
480 490 500 510 520
480 490 500 510 520 530
pF1KB7 KKEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRA
: .. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_011 KFIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTA
530 540 550 560 570
540 550 560 570 580
pF1KB7 RGAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPS
:: . .: : :. . . . : :
XP_011 TTAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQ
580 590 600 610 620 630
>>XP_006716163 (OMIM: 602955,617126) PREDICTED: transcri (677 aa)
initn: 506 init1: 211 opt: 320 Z-score: 220.8 bits: 51.1 E(85289): 1.5e-05
Smith-Waterman score: 431; 24.3% identity (50.8% similar) in 596 aa overlap (35-556:38-615)
10 20 30 40 50 60
pF1KB7 EERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLT
::...: ::..: .:.. .::. ::.:::
XP_006 KLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK--
. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
XP_006 TSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVP
70 80 90 100 110 120
130
pF1KB7 -------------GC-----------------AETAVRVH------------------VS
:: ::.. .. ..
XP_006 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAT
130 140 150 160 170 180
140 150 160 170 180
pF1KB7 YLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDL
::::. :: : .. :. . ::...:.: .:. :::..
XP_006 TADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSI
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB7 QTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
:. . .:: : ... ::. :...: : :......:. :: : : ::. :.
XP_006 ATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIP
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
XP_006 AVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDE
310 320 330 340 350 360
310 320 330 340 350
pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV-
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
XP_006 KTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSL
370 380 390 400 410 420
360 370 380 390 400 410
pF1KB7 ---YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGAE
. : ..: : . .: . . :. : : .. .: :. .. ..
XP_006 LLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQ
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB7 PSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDK
: : : ::. :.: . ..: . .. . : :: : :: :
XP_006 PRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPTK
490 500 510 520 530
480 490 500 510 520 530
pF1KB7 KEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRAR
.. .:. . :. . . .: . :: .:.... :.. .:. . : :
XP_006 FIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTAT
540 550 560 570 580
540 550 560 570 580 590
pF1KB7 GAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP
:: . .: : :. . . . : :
XP_006 TAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE
590 600 610 620 630 640
>>NP_647476 (OMIM: 602955,617126) transcription initiati (677 aa)
initn: 506 init1: 211 opt: 320 Z-score: 220.8 bits: 51.1 E(85289): 1.5e-05
Smith-Waterman score: 431; 24.3% identity (50.8% similar) in 596 aa overlap (35-556:38-615)
10 20 30 40 50 60
pF1KB7 EERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKRRKLT
::...: ::..: .:.. .::. ::.:::
NP_647 KLSNTVLPSESMKVVAESMGIAQIQEETCQLLTDEVSYRIKEIAQDALKFMHMGKRQKLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 VEDFNRALRWSSVEAVCGYGSQEALPMRPAREG--ELYFPEDREVNLVELALATNIPK--
. :.. ::. ..:: . :. .:: .:.: : : :::: :..::.: .. . : .:.
NP_647 TSDIDYALKLKNVEPLYGFHAQEFIPFRFASGGGRELYFYEEKEVDLSDI-INTPLPRVP
70 80 90 100 110 120
130
pF1KB7 -------------GC-----------------AETAVRVH------------------VS
:: ::.. .. ..
NP_647 LDVCLKAHWLSIEGCQPAIPENPPPAPKEQQKAEATEPLKSAKPGQEEDGPLKGKGQGAT
130 140 150 160 170 180
140 150 160 170 180
pF1KB7 YLDGKGNL---------APQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVALQDL
::::. :: : .. :. . ::...:.: .:. :::..
NP_647 TADGKGKEKKAPPLLEGAPLRLKPRSIHELSVEQQLYYKEITEACVGSCEAKRAEALQSI
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB7 QTNSKIGALLPYF-VYVVSGVKS--VSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
:. . .:: : ... ::. :...: : :......:. :: : : ::. :.
NP_647 ATDPGLYQMLPRFSTFISEGVRVNVVQNNLALLIYLMRMVKALMDNPTLYLEKYVHELIP
250 260 270 280 290 300
250 260 270 280 290 300
pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
.:. :.. ...::.::: :: :...: . .... ..: .. : .:
NP_647 AVMTCIVSRQLCLRPDVDNHWALRDFAARLVAQICKHFSTTTNNIQSRITKTFTKSWVDE
310 320 330 340 350 360
310 320 330 340 350
pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNA-QVKADGHKV-
: .::...:: :: ... .. :.:. ...::: .:: .. :: .
NP_647 KTPWTTRYGSIAGLAELGHDVIKTLILPRLQQEGERIRSVLDGPVLSNIDRIGADHVQSL
370 380 390 400 410 420
360 370 380 390 400 410
pF1KB7 ---YGAILVAVERLLKMKAQAAEPNRGGPGGRGCRRL-DDLPWDSLLFQE--SSSGGGAE
. : ..: : . .: . . :. : : .. .: :. .. ..
NP_647 LLKHCAPVLAKLRPPPDNQDAYRAEFGSLGPLLCSQVVKARAQAALQAQQVNRTTLTITQ
430 440 450 460 470 480
420 430 440 450 460 470
pF1KB7 PSFGSGLPLPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDK
: : : ::. :.: . ..: . .. . : :: : :: :
NP_647 PRPTLTLSQAPQ-PGPRTPGLLKVPGSIALPVQTLVSARAA--------APPQPSPPPTK
490 500 510 520 530
480 490 500 510 520 530
pF1KB7 KEPAAAPDSVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPR-VHRAR
.. .:. . :. . . .: . :: .:.... :.. .:. . : :
NP_647 FIVMSSSSSAPSTQQVLSLSTSAPGS-----GSTTTSPVTTTVPSV---QPIVKLVSTAT
540 550 560 570 580
540 550 560 570 580 590
pF1KB7 GAPRQQGP-GTGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSP
:: . .: : :. . . . : :
NP_647 TAPPSTAPSGPGSVQKYIVVSLPPTGEGKGGPTSHPSPVPPPASSPSPLSGSALCGGKQE
590 600 610 620 630 640
622 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Mon Nov 7 15:49:28 2016 done: Mon Nov 7 15:49:29 2016
Total Scan time: 12.630 Total Display time: 0.130
Function used was FASTA [36.3.4 Apr, 2011]