FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7848, 622 aa
  1>>>pF1KB7848 622 - 622 aa - 622 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.4809+/-0.00101; mu= 7.3826+/- 0.061
 mean_var=223.1552+/-44.994, 0's: 0 Z-trim(113.4): 7  B-trim: 764 in 2/48
 Lambda= 0.085856
 statistics sampled from 14029 (14033) to 14029 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.751), E-opt: 0.2 (0.431), width:  16
 Scan time:  4.360

The best scores are:                                      opt bits E(32554)
CCDS8035.1 TAF6L gene_id:10629|Hs108|chr11         ( 622) 4210 534.4 1.7e-151


>>CCDS8035.1 TAF6L gene_id:10629|Hs108|chr11              (622 aa)
 initn: 4210 init1: 4210 opt: 4210  Z-score: 2833.3  bits: 534.4 E(32554): 1.7e-151
Smith-Waterman score: 4210; 100.0% identity (100.0% similar) in 622 aa overlap (1-622:1-622)

               10        20        30        40        50        60
pF1KB7 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MSEREERRFVEIPRESVRLMAESTGLELSDEVAALLAEDVCYRLREATQNSSQFMKHTKR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 RKLTVEDFNRALRWSSVEAVCGYGSQEALPMRPAREGELYFPEDREVNLVELALATNIPK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 GCAETAVRVHVSYLDGKGNLAPQGSVPSAVSSLTDDLLKYYHQVTRAVLGDDPQLMKVAL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QDLQTNSKIGALLPYFVYVVSGVKSVSHDLEQLHRLLQVARSLFRNPHLCLGPYVRCLVG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SVLYCVLEPLAASINPLNDHWTLRDGAALLLSHIFWTHGDLVSGLYQHILLSLQKILADP
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VRPLCCHYGAVVGLHALGWKAVERVLYPHLSTYWTNLQAVLDDYSVSNAQVKADGHKVYG
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 AILVAVERLLKMKAQAAEPNRGGPGGRGCRRLDDLPWDSLLFQESSSGGGAEPSFGSGLP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LPPGGAGPEDPSLSVTLADIYRELYAFFGDSLATRFGTGQPAPTAPRPPGDKKEPAAAPD
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 SVRKMPQLTASAIVSPHGDESPRGSGGGGPASASGPAASESRPLPRVHRARGAPRQQGPG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB7 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 TGTRDVFQKSRFAPRGAPHFRFIIAGRQAGRRCRGRLFQTAFPAPYGPSPASRYVQKLPM
              550       560       570       580       590       600

              610       620  
pF1KB7 IGRTSRPARRWALSDYSLYLPL
       ::::::::::::::::::::::
CCDS80 IGRTSRPARRWALSDYSLYLPL
              610       620  




622 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:49:27 2016 done: Mon Nov  7 15:49:27 2016
 Total Scan time:  4.360 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]