FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7816, 596 aa
  1>>>pF1KB7816 596 - 596 aa - 596 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.3098+/-0.000825; mu= 6.9635+/- 0.050
 mean_var=173.0024+/-35.202, 0's: 0 Z-trim(114.3): 17  B-trim: 477 in 2/49
 Lambda= 0.097510
 statistics sampled from 14838 (14853) to 14838 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.763), E-opt: 0.2 (0.456), width:  16
 Scan time:  4.250

The best scores are:                                      opt bits E(32554)
CCDS32690.1 HSF5 gene_id:124535|Hs108|chr17        ( 596) 4096 588.2  1e-167


>>CCDS32690.1 HSF5 gene_id:124535|Hs108|chr17             (596 aa)
 initn: 4096 init1: 4096 opt: 4096  Z-score: 3124.6  bits: 588.2 E(32554): 1e-167
Smith-Waterman score: 4096; 100.0% identity (100.0% similar) in 596 aa overlap (1-596:1-596)

               10        20        30        40        50        60
pF1KB7 MEALLSTPINPNNFPAKLWRLVNSPRYRSIRWDGRGEGLLIDQPLFEAELLSPPGPGGGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MEALLSTPINPNNFPAKLWRLVNSPRYRSIRWDGRGEGLLIDQPLFEAELLSPPGPGGGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GTAGAGAEPELFKTTSFTSFIRQLNLYGFRKVVLGGPGGGKPAGNGPLHHFHNPHFRRDQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GTAGAGAEPELFKTTSFTSFIRQLNLYGFRKVVLGGPGGGKPAGNGPLHHFHNPHFRRDQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQLLVHLKRLTSANKAKLAAGLEVPCRPPNRFQRLLITSASAATAPLQHQQPPPPAGPRP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQLLVHLKRLTSANKAKLAAGLEVPCRPPNRFQRLLITSASAATAPLQHQQPPPPAGPRP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EPHGPVAVGQFHRSFRRDSLSPYSCVSTPSHDHSTYPLKGLDRTPVPHRIWQNSLGMHPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EPHGPVAVGQFHRSFRRDSLSPYSCVSTPSHDHSTYPLKGLDRTPVPHRIWQNSLGMHPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 QVETSPTFSDKGVPFPVLQRFPTEVTYTLQPSTTSVHVQQGPQTMVSSSQKYSNYTPSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QVETSPTFSDKGVPFPVLQRFPTEVTYTLQPSTTSVHVQQGPQTMVSSSQKYSNYTPSAQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 YSQAYYPTAVLQCCSPTHMDALSSCVTPTASSYAHCNYFQNPSMQSSYPVEFLPSNWPCS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 YSQAYYPTAVLQCCSPTHMDALSSCVTPTASSYAHCNYFQNPSMQSSYPVEFLPSNWPCS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 TTDENTKTEVNLEAVFQIVDELHSSPKLEMVKVEPVENQCPTSPSYRGQHILANSNNSNP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TTDENTKTEVNLEAVFQIVDELHSSPKLEMVKVEPVENQCPTSPSYRGQHILANSNNSNP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB7 CSASQASQLEPLTPVGSDIMSFVVGTEQAVACSLPQSPEYIYTIHTAQPVENSTIQESAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 CSASQASQLEPLTPVGSDIMSFVVGTEQAVACSLPQSPEYIYTIHTAQPVENSTIQESAA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB7 IQQAHVKLKEHLNHNPSPSSVVFVQEGPPFSTHQVDANIKCQTSSRENILPSEQMGFLIS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 IQQAHVKLKEHLNHNPSPSSVVFVQEGPPFSTHQVDANIKCQTSSRENILPSEQMGFLIS
              490       500       510       520       530       540

              550       560       570       580       590      
pF1KB7 EMGPASKPSEDTGLATPARYREHRSNSQQGKSPDLHLLVDVACKQERFPKEEELKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 EMGPASKPSEDTGLATPARYREHRSNSQQGKSPDLHLLVDVACKQERFPKEEELKE
              550       560       570       580       590      




596 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:33:16 2016 done: Sun Nov  6 05:33:17 2016
 Total Scan time:  4.250 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]