FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7768, 410 aa
  1>>>pF1KB7768 410 - 410 aa - 410 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9225+/-0.000754; mu= 14.4420+/- 0.045
 mean_var=85.9935+/-16.853, 0's: 0 Z-trim(110.1): 28  B-trim: 2 in 1/53
 Lambda= 0.138306
 statistics sampled from 11335 (11361) to 11335 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.716), E-opt: 0.2 (0.349), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS31325.1 SIGIRR gene_id:59307|Hs108|chr11       ( 410) 2772 562.8  2e-160
CCDS3298.1 IL1RAP gene_id:3556|Hs108|chr3          ( 570)  319 73.5 5.9e-13
CCDS54696.1 IL1RAP gene_id:3556|Hs108|chr3         ( 687)  309 71.5 2.7e-12


>>CCDS31325.1 SIGIRR gene_id:59307|Hs108|chr11            (410 aa)
 initn: 2772 init1: 2772 opt: 2772  Z-score: 2993.4  bits: 562.8 E(32554): 2e-160
Smith-Waterman score: 2772; 99.8% identity (100.0% similar) in 410 aa overlap (1-410:1-410)

               10        20        30        40        50        60
pF1KB7 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVSGPHCSLPSVQWLKDGLPLGIGG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HYSLHEYSWVKANLSEVLVSSVLGVNVTSTEVYGAFTCSIQNISFSSFTLQRAGPTSHVA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 HYSLHEYSWVKANLSEVLVSSVLGVNVTSTEVYGAFTCSIQNISFSSFTLQRAGPTSHVA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 AVLASLLVLLALLLAALLYVKCRLNVLLWYQDAYGEVEINDGKLYDAYVSYSDCPEDRKF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 AVLASLLVLLALLLAALLYVKCRLNVLLWYQDAYGEVEINDGKLYDAYVSYSDCPEDRKF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 VNFILKPQLERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRAWCSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VNFILKPQLERRRGYKLFLDDRDLLPRAEPSADLLVNLSRCRRLIVVLSDAFLSRAWCSH
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SFREGLCRLLELTRRPIFITFEGQRRDPAHPALRLLRQHRHLVTLLLWRPGSVTPSSDFW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SFREGLCRLLELTRRPIFITFEGQRRDPAHPALRLLRQHRHLVTLLLWRPGSVTPSSDFW
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 KEVQLALPRKVRYRPVEGDPQTQLQDDKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRG
       :::::::::::.::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 KEVQLALPRKVQYRPVEGDPQTQLQDDKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRG
              310       320       330       340       350       360

              370       380       390       400       410
pF1KB7 PVFGEPSAPPHTSGVSLGESRSSEVDVSDLGSRNYSARTDFYCLVSKDDM
       ::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PVFGEPSAPPHTSGVSLGESRSSEVDVSDLGSRNYSARTDFYCLVSKDDM
              370       380       390       400       410

>>CCDS3298.1 IL1RAP gene_id:3556|Hs108|chr3               (570 aa)
 initn: 241 init1: 194 opt: 319  Z-score: 346.1  bits: 73.5 E(32554): 5.9e-13
Smith-Waterman score: 319; 27.2% identity (57.3% similar) in 323 aa overlap (9-321:243-560)

                                     10        20        30        
pF1KB7                       MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVS
                                     : . ::..  : .   :  . . ::..  :
CCDS32 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF-S
            220       230       240       250       260       270  

       40        50         60        70        80         90      
pF1KB7 GPHCSLPSVQWLKDGL-PLGIGGHYSLHEYSWVKANLSEVLVSSVLGVN-VTSTEVYGAF
           :   : :  ::  :  :    ...: :  ..   .   ...:... ::: ..  ..
CCDS32 FLMDSRNEVWWTIDGKKPDDITIDVTINE-SISHSRTEDETRTQILSIKKVTSEDLKRSY
             280       290       300        310       320       330

           100       110       120          130       140       150
pF1KB7 TC---SIQNISFSSFTLQRAGPTSHVAAVLA---SLLVLLALLLAALLYVKCRLNVLLWY
       .:   : ..   ..  ...  :. . .. ::   .  :::...: .. .:   :...:.:
CCDS32 VCHARSAKGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVY-WLEMVLFY
              340       350       360       370       380          

               160       170       180       190       200         
pF1KB7 QDAYGEVE-INDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLDDRDLLPRAE
       .  .:  : : ::: :: ::::.   :...:: . :.  :: . :::: . ::: :: . 
CCDS32 RAHFGTDETILDGKEYDIYVSYARNAEEEEFVLLTLRGVLENEFGYKLCIFDRDSLPGGI
     390       400       410       420       430       440         

     210       220       230       240       250       260         
pF1KB7 PSADLLVNLSRCRRLIVVLSDAFLSRAWCSHSFREGLCRLLELTRRPIFITFEGQRRDPA
        . . :  ... :::.::::  .. ..  .... :    : ... :  . ..  : .   
CCDS32 VTDETLSFIQKSRRLLVVLSPNYVLQG--TQALLELKAGLENMASRGNINVILVQYKAVK
     450       460       470         480       490       500       

     270       280        290       300       310       320        
pF1KB7 HPALRLLRQHRHLVTLLLWR-PGSVTPSSDFWKEVQLALPRKVRYRPVEGDPQTQLQDDK
       .  .. :.. . ..:.. :.   :  :.. :::..:.:.: :   :   .: :       
CCDS32 ETKVKELKRAKTVLTVIKWKGEKSKYPQGRFWKQLQVAMPVKKSPRRSSSDEQGLSYSSL
       510       520       530       540       550       560       

      330       340       350       360       370       380        
pF1KB7 DPMLILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPHTSGVSLGESRSSEVDVS
                                                                   
CCDS32 KNV                                                         
       570                                                         

>>CCDS54696.1 IL1RAP gene_id:3556|Hs108|chr3              (687 aa)
 initn: 240 init1: 195 opt: 309  Z-score: 334.1  bits: 71.5 E(32554): 2.7e-12
Smith-Waterman score: 309; 28.8% identity (56.7% similar) in 312 aa overlap (9-308:243-545)

                                     10        20        30        
pF1KB7                       MPGVCDRAPDFLSPSEDQVLRPALGSSVALNCTAWVVS
                                     : . ::..  : .   :  . . ::..  :
CCDS54 VVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYF-S
            220       230       240       250       260       270  

       40        50         60        70        80         90      
pF1KB7 GPHCSLPSVQWLKDGL-PLGIGGHYSLHEYSWVKANLSEVLVSSVLGVN-VTSTEVYGAF
           :   : :  ::  :  :    ...: :  ..   .   ...:... ::: ..  ..
CCDS54 FLMDSRNEVWWTIDGKKPDDITIDVTINE-SISHSRTEDETRTQILSIKKVTSEDLKRSY
             280       290       300        310       320       330

           100       110       120          130       140       150
pF1KB7 TC---SIQNISFSSFTLQRAGPTSHVAAVLA---SLLVLLALLLAALLYVKCRLNVLLWY
       .:   : ..   ..  ...  :. . .. ::   .  :::...: .. .:   :...:.:
CCDS54 VCHARSAKGEVAKAAKVKQKVPAPRYTVELACGFGATVLLVVILIVVYHVY-WLEMVLFY
              340       350       360       370       380          

               160       170       180       190       200         
pF1KB7 QDAYGEVE-INDGKLYDAYVSYSDCPEDRKFVNFILKPQLERRRGYKLFLDDRDLLPRAE
       .  .:  : : ::: :: ::::.   :...:: . :.  :: . :::: . ::: :: ..
CCDS54 RAHFGTDETILDGKEYDIYVSYARNAEEEEFVLLTLRGVLENEFGYKLCIFDRDSLPGGN
     390       400       410       420       430       440         

     210       220       230       240         250       260       
pF1KB7 PSADLLVNLSRCRRLIVVLSDAFLSRAWCSH-SFREG-LCRLLELTRRPIFITFEGQRRD
           ..  ..: ::.:::::  ....   :   :. : .:.    :.   .:. : .  .
CCDS54 TVEAVFDFIQRSRRMIVVLSPDYVTEKSISMLEFKLGVMCQNSIATK---LIVVEYRPLE
     450       460       470       480       490          500      

       270       280        290       300       310       320      
pF1KB7 PAHPALRLLRQHRHLVTLLLWR-PGSVTPSSDFWKEVQLALPRKVRYRPVEGDPQTQLQD
         ::..  :..    :... :.   :   .: ::: ..::::                  
CCDS54 HPHPGILQLKES---VSFVSWKGEKSKHSGSKFWKALRLALPLRSLSASSGWNESCSSQS
        510          520       530       540       550       560   

        330       340       350       360       370       380      
pF1KB7 DKDPMLILRGRVPEGRALDSEVDPDPEGDLGVRGPVFGEPSAPPHTSGVSLGESRSSEVD
                                                                   
CCDS54 DISLDHVQRRRSRLKEPPELQSSERAAGSPPAPGTMSKHRGKSSATCRCCVTYCEGENHL
           570       580       590       600       610       620   




410 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 02:31:39 2016 done: Mon Nov  7 02:31:39 2016
 Total Scan time:  3.280 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]