FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7739, 436 aa
  1>>>pF1KB7739 436 - 436 aa - 436 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1588+/-0.000323; mu= 9.4370+/- 0.020
 mean_var=127.8760+/-25.946, 0's: 0 Z-trim(119.5): 12  B-trim: 0 in 0/55
 Lambda= 0.113417
 statistics sampled from 33535 (33547) to 33535 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.393), width:  16
 Scan time:  9.730

The best scores are:                                      opt bits E(85289)
NP_003634 (OMIM: 603715) chorion-specific transcri ( 436) 3090 516.7 4.8e-146
XP_016866879 (OMIM: 603715) PREDICTED: chorion-spe ( 498) 3090 516.7 5.3e-146
NP_004743 (OMIM: 146200,603716) chorion-specific t ( 506)  824 145.9 2.2e-34


>>NP_003634 (OMIM: 603715) chorion-specific transcriptio  (436 aa)
 initn: 3090 init1: 3090 opt: 3090  Z-score: 2743.0  bits: 516.7 E(85289): 4.8e-146
Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436)

               10        20        30        40        50        60
pF1KB7 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRHLSSWA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPNCDGPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTAPSSVS
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDCFSFSK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 SYGLGGITDLTDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASGVYSDHGDLQAWSKN
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AALGRNHLADNCYSNYPFPLTSWPCSFSPSQNSSEPFYQQLPLEPPAAKTGCPPLWPNPA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 GNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPHQQYSLPSKSSKWDFEEEMTYLG
              370       380       390       400       410       420

              430      
pF1KB7 LDHCNNDMLLNLCPLR
       ::::::::::::::::
NP_003 LDHCNNDMLLNLCPLR
              430      

>>XP_016866879 (OMIM: 603715) PREDICTED: chorion-specifi  (498 aa)
 initn: 3090 init1: 3090 opt: 3090  Z-score: 2742.1  bits: 516.7 E(85289): 5.3e-146
Smith-Waterman score: 3090; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:63-498)

                                             10        20        30
pF1KB7                               MEPDDFDSEDKEILSWDINDVKLPQNVKKT
                                     ::::::::::::::::::::::::::::::
XP_016 QLYQEPLRTKFSSISEGSRIGENLGWPDLIMEPDDFDSEDKEILSWDINDVKLPQNVKKT
             40        50        60        70        80        90  

               40        50        60        70        80        90
pF1KB7 DWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DWFQEWPDSYAKHIYSSEDKNAQRHLSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEE
            100       110       120       130       140       150  

              100       110       120       130       140       150
pF1KB7 GRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GRKIYLRPAICDKARQKQQRKRCPNCDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKG
            160       170       180       190       200       210  

              160       170       180       190       200       210
pF1KB7 EHDHPKPETKLEAEARRAMKKVNTAPSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EHDHPKPETKLEAEARRAMKKVNTAPSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQE
            220       230       240       250       260       270  

              220       230       240       250       260       270
pF1KB7 GVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGLGGITDLTDQTSTVDPMKLYEKRKLSS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVQLPGSYSGHLIANTPQQNSLNDCFSFSKSYGLGGITDLTDQTSTVDPMKLYEKRKLSS
            280       290       300       310       320       330  

              280       290       300       310       320       330
pF1KB7 SRTYSSGDLLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SRTYSSGDLLPPSASGVYSDHGDLQAWSKNAALGRNHLADNCYSNYPFPLTSWPCSFSPS
            340       350       360       370       380       390  

              340       350       360       370       380       390
pF1KB7 QNSSEPFYQQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QNSSEPFYQQLPLEPPAAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFL
            400       410       420       430       440       450  

              400       410       420       430      
pF1KB7 FTYASHPHQQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR
       ::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FTYASHPHQQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR
            460       470       480       490        

>>NP_004743 (OMIM: 146200,603716) chorion-specific trans  (506 aa)
 initn: 824 init1: 797 opt: 824  Z-score: 738.2  bits: 145.9 E(85289): 2.2e-34
Smith-Waterman score: 838; 39.2% identity (61.1% similar) in 388 aa overlap (14-384:19-397)

                    10        20        30        40        50     
pF1KB7      MEPDDFDSEDKEILSWDINDVKLPQNVKKTDWFQEWPDSYAKHIYSSEDKNAQRH
                         ::::::: ..::..   : :.::::.:.. ::::..:.::::
NP_004 MPAAAVQEAVGVCSYGMQLSWDINDPQMPQELALFDQFREWPDGYVRFIYSSDEKKAQRH
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB7 LSSWAMRNTNNHNSRILKKSCLGVVVCGRDCLAEEGRKIYLRPAICDKARQKQQRKRCPN
       ::.::::::::::..:::::::::::: . :   .: .. :::::::::: :::.: :::
NP_004 LSGWAMRNTNNHNGHILKKSCLGVVVCTQACTLPDGSRLQLRPAICDKARLKQQKKACPN
               70        80        90       100       110       120

         120       130       140       150       160       170     
pF1KB7 CDGPLKLIPCRGHGGFPVTNFWRHDGRFIFFQSKGEHDHPKPETKLEAEARRAMKKVNTA
       : . :.:::::::.:.::::::: ::  ::::.:: ::::.::.: :.::::.  : . :
NP_004 CHSALELIPCRGHSGYPVTNFWRLDGNAIFFQAKGVHDHPRPESKSETEARRSAIKRQMA
              130       140       150       160       170       180

         180       190       200       210       220       230     
pF1KB7 PSSVSLSLKGSTETRSLPGETQSQGSLPLTWSFQEGVQLPGSYSGHLIANTPQQNSLNDC
           :.    . . :    :.... .   .  :..   : .  .  ....:      . :
NP_004 ----SFYQPQKKRIR----ESEAEENQDSSGHFSNIPPLENPEDFDIVTETSFPIPGQPC
                  190           200       210       220       230  

         240       250        260       270       280              
pF1KB7 FSFSKSYGLGGITDL-TDQTSTVDPMKLYEKRKLSSSRTYSSGDLLPPSASG------VY
        :: ::    .  :: : : . . :.. : . ..   :   : .:  :. ..      .:
NP_004 PSFPKSDVYKATCDLATFQGDKMPPFQKYSSPRIYLPRPPCSYELANPGYTNSSPYPTLY
            240       250       260       270       280       290  

      290       300       310         320            330           
pF1KB7 SDHGDLQAWSKNAALGRNHLADNCYSNYP--FPLTS----W-PCSFSPS--QNSSEPFYQ
       .:  ..   .  . :.  .   : ::.:   : .:.    : :   .::  . ...  .:
NP_004 KDSTSIPNDTDWVHLNTLQCNVNSYSSYERSFDFTNKQHGWKPALGKPSLVERTNHGQFQ
            300       310       320       330       340       350  

     340        350       360       370       380       390        
pF1KB7 QLPLEPP-AAKTGCPPLWPNPAGNLYEEKVHVDFNSYVQSPAYHSPQEDPFLFTYASHPH
        .  .:    .  :  :   : :    . : .  .. :.  ::. :              
NP_004 AMATRPYYNPELPCRYLTTPPPGAPALQTV-ITTTTKVSYQAYQPPAMKYSDSVREVKSL
            360       370       380        390       400       410 

      400       410       420       430                            
pF1KB7 QQYSLPSKSSKWDFEEEMTYLGLDHCNNDMLLNLCPLR                      
                                                                   
NP_004 SSCNYAPEDTGMSVYPEPWGPPVTVTRAASPSGPPPMKIAGDCRAIRPTVAIPHEPVSSR
             420       430       440       450       460       470 




436 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:40:20 2016 done: Sun Nov  6 05:40:21 2016
 Total Scan time:  9.730 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]