FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7727, 431 aa
  1>>>pF1KB7727 431 - 431 aa - 431 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1032+/-0.000729; mu= 10.3771+/- 0.044
 mean_var=114.2292+/-23.190, 0's: 0 Z-trim(112.7): 11  B-trim: 0 in 0/52
 Lambda= 0.120001
 statistics sampled from 13422 (13431) to 13422 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.413), width:  16
 Scan time:  3.280

The best scores are:                                      opt bits E(32554)
CCDS3743.1 NOCT gene_id:25819|Hs108|chr4           ( 431) 2963 523.3 1.8e-148


>>CCDS3743.1 NOCT gene_id:25819|Hs108|chr4                (431 aa)
 initn: 2963 init1: 2963 opt: 2963  Z-score: 2779.2  bits: 523.3 E(32554): 1.8e-148
Smith-Waterman score: 2963; 100.0% identity (100.0% similar) in 431 aa overlap (1-431:1-431)

               10        20        30        40        50        60
pF1KB7 MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MFHSPRRLCSALLQRDAPGLRRLPAPGLRRPLSPPAAVPRPASPRLLAAASAASGAARSC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SRTVCSMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 SRTVCSMGTGTSRLYSALAKTLNSSAASQHPEYLVSPDPEHLEPIDPKELLEECRAVLHT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 RPPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 RPPRFQRDFVDLRTDCPSTHPPIRVMQWNILAQALGEGKDNFVQCPVEALKWEERKCLIL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 EEILAYQPDILCLQEVDHYFDTFQPLLSRLGYQGTFFPKPWSPCLDVEHNNGPDGCALFF
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LQNRFKLVNSANIRLTAMTLKTNQVAIAQTLECKESGRQFCIAVTHLKARTGWERFRSAQ
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 GCDLLQNLQNITQGAKIPLIVCGDFNAEPTEEVYKHFASSSLNLNSAYKLLSADGQSEPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 YTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 YTTWKIRTSGECRHTLDYIWYSKHALNVRSALDLLTEEQIGPNRLPSFNYPSDHLSLVCD
              370       380       390       400       410       420

              430 
pF1KB7 FSFTEESDGLS
       :::::::::::
CCDS37 FSFTEESDGLS
              430 




431 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:46:10 2016 done: Sun Nov  6 05:46:11 2016
 Total Scan time:  3.280 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]