FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7704, 462 aa
  1>>>pF1KB7704 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.3938+/-0.00115; mu= -4.7728+/- 0.070
 mean_var=289.7392+/-58.259, 0's: 0 Z-trim(111.3): 15  B-trim: 0 in 0/54
 Lambda= 0.075348
 statistics sampled from 12298 (12304) to 12298 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.378), width:  16
 Scan time:  3.420

The best scores are:                                      opt bits E(32554)
CCDS35347.1 TAF7L gene_id:54457|Hs108|chrX         ( 462) 2984 337.9 1.3e-92
CCDS55466.1 TAF7L gene_id:54457|Hs108|chrX         ( 376) 2439 278.6 7.7e-75
CCDS4259.1 TAF7 gene_id:6879|Hs108|chr5            ( 349)  726 92.4 8.3e-19


>>CCDS35347.1 TAF7L gene_id:54457|Hs108|chrX              (462 aa)
 initn: 2984 init1: 2984 opt: 2984  Z-score: 1776.0  bits: 337.9 E(32554): 1.3e-92
Smith-Waterman score: 2984; 99.8% identity (99.8% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB7 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQIPVDRGSETTYESSADIAGDEGTQIPAD
       ::::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
CCDS35 MECPEGQLPISSENDSTPTVSTSEVTSQQEPQILVDRGSETTYESSADIAGDEGTQIPAD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 EDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRNLARS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 QSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTADISQM
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRKTQKK
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 VPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGSIPGF
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 LISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 LISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKEEEEE
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 DCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS35 DCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQKDLIM
              370       380       390       400       410       420

              430       440       450       460  
pF1KB7 KVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
       ::::::::::::::::::::::::::::::::::::::::::
CCDS35 KVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
              430       440       450       460  

>>CCDS55466.1 TAF7L gene_id:54457|Hs108|chrX              (376 aa)
 initn: 2439 init1: 2439 opt: 2439  Z-score: 1457.1  bits: 278.6 E(32554): 7.7e-75
Smith-Waterman score: 2439; 100.0% identity (100.0% similar) in 376 aa overlap (87-462:1-376)

         60        70        80        90       100       110      
pF1KB7 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN
                                     ::::::::::::::::::::::::::::::
CCDS55                               MSESQDEVPDEVENQFILRLPLEHACTVRN
                                             10        20        30

        120       130       140       150       160       170      
pF1KB7 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD
               40        50        60        70        80        90

        180       190       200       210       220       230      
pF1KB7 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK
              100       110       120       130       140       150

        240       250       260       270       280       290      
pF1KB7 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS
              160       170       180       190       200       210

        300       310       320       330       340       350      
pF1KB7 IPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 IPGFLISSGMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDKE
              220       230       240       250       260       270

        360       370       380       390       400       410      
pF1KB7 EEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEEEDCSEEYLERQLQAEFIESGQYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQRQK
              280       290       300       310       320       330

        420       430       440       450       460  
pF1KB7 DLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 DLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
              340       350       360       370      

>>CCDS4259.1 TAF7 gene_id:6879|Hs108|chr5                 (349 aa)
 initn: 1213 init1: 669 opt: 726  Z-score: 451.2  bits: 92.4 E(32554): 8.3e-19
Smith-Waterman score: 1288; 57.1% identity (79.1% similar) in 378 aa overlap (87-462:1-349)

         60        70        80        90       100       110      
pF1KB7 IPADEDTQTDADSSAQAAAQAPENFQEGKDMSESQDEVPDEVENQFILRLPLEHACTVRN
                                     ::.:.:..: :.:.::::::: :.: ::: 
CCDS42                               MSKSKDDAPHELESQFILRLPPEYASTVRR
                                             10        20        30

        120       130       140       150       160       170      
pF1KB7 LARSQSVKMKDKLKIDLLPDGRHAVVEVEDVPLAAKLVDLPCVIESLRTLDKKTFYKTAD
        ..:  :..::.: :.: :::::..:.:. ::::.::::::::.:::.:.::::::::::
CCDS42 AVQSGHVNLKDRLTIELHPDGRHGIVRVDRVPLASKLVDLPCVMESLKTIDKKTFYKTAD
               40        50        60        70        80        90

        180       190       200       210       220       230      
pF1KB7 ISQMLVCTADGDIHLSPEEPAASTDPNIVRKKERGREEKCVWKHGITPPLKNVRKKRFRK
       : :::: :.:::..   :::.:::::.  .::.. .:.: .:.:::: :::::::.::::
CCDS42 ICQMLVSTVDGDLYPPVEEPVASTDPKASKKKDKDKEKKFIWNHGITLPLKNVRKRRFRK
              100       110       120       130       140       150

        240       250       260       270       280       290      
pF1KB7 TQKKVPDVKEMEKSSFTEYIESPDVENEVKRLLRSDAEAVSTRWEVIAEDGTKEIESQGS
       : ::             .::::::::.:::::: .::::::::::.:::: ::: :.:: 
CCDS42 TAKK-------------KYIESPDVEKEVKRLLSTDAEAVSTRWEIIAEDETKEAENQG-
                           160       170       180       190       

        300        310       320       330       340       350     
pF1KB7 IPGFLISS-GMSSHKQGHTSSEYDMLREMFSDSRSNNDDDEDEDDEDEDEDEDEDEDEDK
          . ::: :::.:.::: : :.: :::.:.:  :..      .:::: . .:: :: . 
CCDS42 ---LDISSPGMSGHRQGHDSLEHDELREIFNDLSSSS------EDEDETQHQDE-EDINI
           200       210       220       230             240       

         360       370        380       390       400       410    
pF1KB7 EEEEEDCSEEYLERQLQAEFIESG-QYRANEGTSSIVMEIQKQIEKKEKKLHKIQNKAQR
        . :::     :::::: .. ::  :.. ::::...:: :::::.. . ::.. :..:.:
CCDS42 IDTEED-----LERQLQDKLNESDEQHQENEGTNQLVMGIQKQIDNMKGKLQETQDRAKR
        250            260       270       280       290       300 

          420       430       440       450       460  
pF1KB7 QKDLIMKVENLTLKNHFQSVLEQLELQEKQKNEKLISLQEQLQRFLKK
       :.:::::::::.:::.::.::..:. .: ...:.: ::::.:. .:.:
CCDS42 QEDLIMKVENLALKNRFQAVLDELKQKEDREKEQLSSLQEELESLLEK
             310       320       330       340         




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:03:34 2016 done: Mon Nov  7 17:03:35 2016
 Total Scan time:  3.420 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]