Result of FASTA (omim) for
pFN21AB7686
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7686, 410 aa
1>>>pF1KB7686 410 - 410 aa - 410 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.2705+/-0.0003; mu= 8.3385+/- 0.019
mean_var=110.3692+/-22.187, 0's: 0 Z-trim(120.4): 412 B-trim: 0 in 0/56
Lambda= 0.122082
statistics sampled from 35084 (35498) to 35084 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.416), width: 16
Scan time: 9.980
The best scores are: opt bits E(85289)
NP_055064 (OMIM: 268100,604485,611131) photorecept ( 410) 2773 498.7 1.1e-140
NP_057430 (OMIM: 268100,604485,611131) photorecept ( 367) 2495 449.7 5.4e-126
NP_001273031 (OMIM: 603849) nuclear receptor subfa ( 422) 1076 199.8 1.1e-50
NP_003260 (OMIM: 603849) nuclear receptor subfamil ( 385) 1059 196.8 7.7e-50
NP_005225 (OMIM: 132880) nuclear receptor subfamil ( 404) 633 121.8 3.1e-27
XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP ( 273) 596 115.2 2e-25
NP_001138629 (OMIM: 107773,615779) COUP transcript ( 261) 593 114.7 2.8e-25
NP_001138628 (OMIM: 107773,615779) COUP transcript ( 261) 593 114.7 2.8e-25
NP_005645 (OMIM: 132890,615722) COUP transcription ( 423) 596 115.3 3e-25
NP_001138627 (OMIM: 107773,615779) COUP transcript ( 281) 593 114.7 3e-25
NP_066285 (OMIM: 107773,615779) COUP transcription ( 414) 593 114.7 4.2e-25
NP_619726 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20
NP_005028 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20
XP_011532143 (OMIM: 125853,601487,601665,604367,60 ( 477) 498 98.0 5.2e-20
NP_619725 (OMIM: 125853,601487,601665,604367,60933 ( 477) 498 98.0 5.2e-20
NP_056953 (OMIM: 125853,601487,601665,604367,60933 ( 505) 498 98.0 5.5e-20
NP_001278850 (OMIM: 180245) retinoic acid receptor ( 365) 471 93.2 1.1e-18
NP_001278849 (OMIM: 180245) retinoic acid receptor ( 435) 471 93.2 1.3e-18
NP_002948 (OMIM: 180245) retinoic acid receptor RX ( 462) 471 93.3 1.4e-18
NP_001165290 (OMIM: 600409) peroxisome proliferato ( 402) 468 92.7 1.7e-18
XP_011513011 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_011513009 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_016866461 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_006715183 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_016866460 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_011513012 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
NP_001165289 (OMIM: 600409) peroxisome proliferato ( 441) 468 92.7 1.9e-18
XP_006715186 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
NP_006229 (OMIM: 600409) peroxisome proliferator-a ( 441) 468 92.7 1.9e-18
XP_016866463 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_016866462 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
XP_005249250 (OMIM: 600409) PREDICTED: peroxisome ( 441) 468 92.7 1.9e-18
NP_001278918 (OMIM: 180246) retinoic acid receptor ( 347) 456 90.6 6.6e-18
XP_016866665 (OMIM: 180246) PREDICTED: retinoic ac ( 414) 456 90.6 7.7e-18
XP_011513098 (OMIM: 180246) PREDICTED: retinoic ac ( 420) 456 90.6 7.8e-18
XP_005249335 (OMIM: 180246) PREDICTED: retinoic ac ( 441) 456 90.6 8.2e-18
NP_001257330 (OMIM: 180246) retinoic acid receptor ( 537) 456 90.6 9.7e-18
XP_011530279 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17
XP_011530278 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17
XP_011530277 (OMIM: 177735,600983,605115) PREDICTE ( 988) 456 90.7 1.7e-17
NP_068811 (OMIM: 180246) retinoic acid receptor RX ( 533) 451 89.8 1.8e-17
NP_001243499 (OMIM: 180247) retinoic acid receptor ( 340) 444 88.5 2.8e-17
NP_001243500 (OMIM: 180247) retinoic acid receptor ( 340) 444 88.5 2.8e-17
XP_011528543 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17
NP_001001928 (OMIM: 170998) peroxisome proliferato ( 468) 445 88.7 3.3e-17
XP_005261713 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17
NP_005027 (OMIM: 170998) peroxisome proliferator-a ( 468) 445 88.7 3.3e-17
XP_011528545 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17
XP_011528542 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17
XP_006724332 (OMIM: 170998) PREDICTED: peroxisome ( 468) 445 88.7 3.3e-17
>>NP_055064 (OMIM: 268100,604485,611131) photoreceptor-s (410 aa)
initn: 2773 init1: 2773 opt: 2773 Z-score: 2646.8 bits: 498.7 E(85289): 1.1e-140
Smith-Waterman score: 2773; 100.0% identity (100.0% similar) in 410 aa overlap (1-410:1-410)
10 20 30 40 50 60
pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH
310 320 330 340 350 360
370 380 390 400 410
pF1KB7 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
370 380 390 400 410
>>NP_057430 (OMIM: 268100,604485,611131) photoreceptor-s (367 aa)
initn: 2495 init1: 2495 opt: 2495 Z-score: 2382.9 bits: 449.7 E(85289): 5.4e-126
Smith-Waterman score: 2495; 100.0% identity (100.0% similar) in 367 aa overlap (1-367:1-367)
10 20 30 40 50 60
pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQCRVCGDSSSGKHYG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 IYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQN
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMAVKWAKNLPV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 FSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASMET
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_057 RVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQVMLSQHSKAH
310 320 330 340 350 360
370 380 390 400 410
pF1KB7 HPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
:::::::
NP_057 HPSQPVR
>>NP_001273031 (OMIM: 603849) nuclear receptor subfamily (422 aa)
initn: 1058 init1: 377 opt: 1076 Z-score: 1031.3 bits: 199.8 E(85289): 1.1e-50
Smith-Waterman score: 1076; 43.3% identity (68.7% similar) in 409 aa overlap (16-410:21-419)
10 20 30 40 50
pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRW-GLGEDPTGVSPSLQCRVCGDSS
: :. : . : : .: :.: : .. :.:::: :
NP_001 MFRAGAEGAEKEPSPRPECRADPGPGLGFPLGSGLPWPSLLESPGGRILDIPCKVCGDRS
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 SGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGM
::::::.:::.:::::::::.:: : :. : : :::::.:::::.::::::::...:
NP_001 SGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNM
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB7 NQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHF
:.::::.:: :: :. .. . . :. .: :.. : .:. ..:. : :
NP_001 NKDAVQHERGPR-TSTIRKQVALYFRGHKEENGAAAHFPSAALP-APAFFTAVTQLEPHG
130 140 150 160 170
180 190 200 210 220
pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLL
. .. : :: ..... :..: ...: : .:. :..::::
NP_001 LELAAVSTT-----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLL
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG
::..::::..:.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. .
NP_001 FMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNT
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEH
. .:. : ..:::...::: : .: :::::.: .: :: : : :....
NP_001 DSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAA
300 310 320 330 340 350
350 360 370 380 390 400
pF1KB7 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPME
. ::::..:. :... ....:.:: ::::::::::.:: :. :: .::.:::::.:.
NP_001 IAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPIT
360 370 380 390 400 410
410
pF1KB7 KLLCDMFKN
.:: ::.:.
NP_001 RLLSDMYKSSDI
420
>>NP_003260 (OMIM: 603849) nuclear receptor subfamily 2 (385 aa)
initn: 1058 init1: 377 opt: 1059 Z-score: 1015.7 bits: 196.8 E(85289): 7.7e-50
Smith-Waterman score: 1059; 43.7% identity (69.9% similar) in 389 aa overlap (38-410:4-382)
10 20 30 40 50 60
pF1KB7 LMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSP---SLQCRVCGDSSSGKHYGIYAC
:.: . .. :.:::: :::::::.:::
NP_003 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYAC
10 20 30
70 80 90 100 110 120
pF1KB7 NGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQ
.:::::::::.:: : :. : : :::::.:::::.::::::::...::.::::.::
NP_003 DGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERG
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 PRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITAETC
:: :. .. . . :. .: :.. : .:. ..:. : : . .. :
NP_003 PR-TSTIRKQVALYFRGHKEENGAAAHFPSAALP-APAFFTAVTQLEPHGLELAAVSTT-
100 110 120 130 140 150
190 200 210 220 230
pF1KB7 AKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLLFMAVKWAKNL
:: ..... :..: ...: : .:. :..::::::..::::..
NP_003 ----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLLFMSIKWAKSV
160 170 180 190 200
240 250 260 270 280 290
pF1KB7 PVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTLASM
:.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. . . .:.
NP_003 PAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIIS
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB7 ETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEHVEALQDQSQV
: ..:::...::: : .: :::::.: .: :: : : :.... . ::::..:.
NP_003 EIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQL
270 280 290 300 310 320
360 370 380 390 400 410
pF1KB7 MLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
:... ....:.:: ::::::::::.:: :. :: .::.:::::.:. .:: ::.:.
NP_003 TLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSS
330 340 350 360 370 380
NP_003 DI
>>NP_005225 (OMIM: 132880) nuclear receptor subfamily 2 (404 aa)
initn: 955 init1: 573 opt: 633 Z-score: 609.9 bits: 121.8 E(85289): 3.1e-27
Smith-Waterman score: 956; 41.1% identity (65.5% similar) in 397 aa overlap (14-408:21-390)
10 20 30 40 50
pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSPSLQ--CRVCG
:.. : :. . :: . .: :.:: : :::
NP_005 MAMVTGGWGGPGGDTNGVDKAGGYPRAAEDDSASPPGAASDAEPGDEERPGLQVDCVVCG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB7 DSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLKKCLQA
:.:::::::...:.::..:::::.:: : : :. . : .:. :::::: ::::::...
NP_005 DKSSGKHYGVFTCEGCKSFFKRSIRRNLSYTCRSNRD-CQIDQHHRNQCQYCRLKKCFRV
70 80 90 100 110
120 130 140 150 160 170
pF1KB7 GMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGH
:: ..::: : :.: .. ... : : : .: : .: : :.:
NP_005 GMRKEAVQRGRIPHSLP----GAVAASSGSPPGSALAAVASGGDLFPGQ-PVS-------
120 130 140 150 160
180 190 200 210 220 230
pF1KB7 HFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGLDSIHETSARLLFMA
...:.:. :: : : . .: .. .... :.:.. : .::::: .
NP_005 ELIAQLLRAE------PYPAAAG--------RFGAGGGAAGAVLGIDNVCELAARLLFST
170 180 190 200 210
240 250 260 270 280 290
pF1KB7 VKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQG
:.::.. : : :: ::: ::. .:::::.:.: : .::: . :::: :: :
NP_005 VEWARHAPFFPELPVADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAE
220 230 240 250 260 270
300 310 320 330 340 350
pF1KB7 RLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQSQV
: . ..:..:: .... : :: .:..:.::..:: :.. ::.:: :::.::...::
NP_005 RAVAFMDQVRAFQEQVDKLGRLQVDSAEYGCLKAIALFTPDACGLSDPAHVESLQEKAQV
280 290 300 310 320 330
360 370 380 390 400 410
pF1KB7 MLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMFKN
:... .:..:::: :::.::: ::.:: . : : ::: . .:.::.: :. ::.
NP_005 ALTEYVRAQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSG
340 350 360 370 380 390
NP_005 STFNWPYGSGQ
400
>>XP_016865286 (OMIM: 132890,615722) PREDICTED: COUP tra (273 aa)
initn: 614 init1: 566 opt: 596 Z-score: 577.4 bits: 115.2 E(85289): 2e-25
Smith-Waterman score: 596; 44.8% identity (72.4% similar) in 210 aa overlap (204-408:48-257)
180 190 200 210 220
pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL
.:.: :.:. .: :...: : .::::
XP_016 PGQYALTNGDPLNGHCYLSGYISLLLRAEPYPTSRYGSQCMQPNNIMGIENICELAARLL
20 30 40 50 60 70
230 240 250 260 270 280
pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG
: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :.
XP_016 FSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM
80 90 100 110 120 130
290 300 310 320 330 340
pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ
. :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :.:.::..
XP_016 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAHIESLQEK
140 150 160 170 180 190
350 360 370 380 390 400
pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF
:: : .. ....:.:: ::::::: ::::: ... :: ::: . .:.::.: :. ::.
XP_016 SQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML
200 210 220 230 240 250
410
pF1KB7 KN
XP_016 LSGSSFNWPYMSIQCS
260 270
>>NP_001138629 (OMIM: 107773,615779) COUP transcription (261 aa)
initn: 591 init1: 567 opt: 593 Z-score: 574.8 bits: 114.7 E(85289): 2.8e-25
Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:38-247)
180 190 200 210 220
pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL
.:.: ..:. .: :...: : .::.:
NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML
10 20 30 40 50 60
230 240 250 260 270 280
pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG
: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :.
NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM
70 80 90 100 110 120
290 300 310 320 330 340
pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ
. :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::..
NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK
130 140 150 160 170 180
350 360 370 380 390 400
pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF
:: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::.
NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML
190 200 210 220 230 240
410
pF1KB7 KN
NP_001 LSGSSFNWPYMAIQ
250 260
>>NP_001138628 (OMIM: 107773,615779) COUP transcription (261 aa)
initn: 591 init1: 567 opt: 593 Z-score: 574.8 bits: 114.7 E(85289): 2.8e-25
Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:38-247)
180 190 200 210 220
pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL
.:.: ..:. .: :...: : .::.:
NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML
10 20 30 40 50 60
230 240 250 260 270 280
pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG
: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :.
NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM
70 80 90 100 110 120
290 300 310 320 330 340
pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ
. :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::..
NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK
130 140 150 160 170 180
350 360 370 380 390 400
pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF
:: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::.
NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML
190 200 210 220 230 240
410
pF1KB7 KN
NP_001 LSGSSFNWPYMAIQ
250 260
>>NP_005645 (OMIM: 132890,615722) COUP transcription fac (423 aa)
initn: 960 init1: 566 opt: 596 Z-score: 574.4 bits: 115.3 E(85289): 3e-25
Smith-Waterman score: 939; 40.6% identity (63.5% similar) in 397 aa overlap (21-408:56-407)
10 20 30 40
pF1KB7 METRPTALMSSTVAAAAPAAGAASRKESPGRWG-LGEDPTGVSPSLQ---
: . .:: : :. : : . : :
NP_005 AAQAARGGGGGAGEQQQQAGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIE
30 40 50 60 70 80
50 60 70 80 90 100
pF1KB7 CRVCGDSSSGKHYGIYACNGCSGFFKRSVRRRLIYRCQVGAGMCPVDKAHRNQCQACRLK
: ::::.::::::: ..:.::..:::::::: : : :... . ::.:. :::::: ::::
NP_005 CVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRN-CPIDQHHRNQCQYCRLK
90 100 110 120 130 140
110 120 130 140 150 160
pF1KB7 KCLQAGMNQDAVQNERQPRSTAQVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAA
:::..:: ..::: :.: : . : :. . . :..
NP_005 KCLKVGMRREAVQRGRMP------------------PTQ----PNPGQYALTNGDPLN--
150 160 170 180
170 180 190 200 210 220
pF1KB7 RALGHHFMASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIH
:: .... :. . :: .:.: :.:. .: :...:
NP_005 ---GHCYLSGYIS--LLLRAEP---------------YPTSRYGSQCMQPNNIMGIENIC
190 200 210 220
230 240 250 260 270 280
pF1KB7 ETSARLLFMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPP
: .::::: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: ::::
NP_005 ELAARLLFSAVEWARNIPFFPDLQITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAA
230 240 250 260 270 280
290 300 310 320 330 340
pF1KB7 EASAAGGAQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEH
:. . :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :
NP_005 GLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDAAH
290 300 310 320 330 340
350 360 370 380 390 400
pF1KB7 VEALQDQSQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPME
.:.::..:: : .. ....:.:: ::::::: ::::: ... :: ::: . .:.::.:
NP_005 IESLQEKSQCALEEYVRSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIE
350 360 370 380 390 400
410
pF1KB7 KLLCDMFKN
:. ::.
NP_005 TLIRDMLLSGSSFNWPYMSIQCS
410 420
>>NP_001138627 (OMIM: 107773,615779) COUP transcription (281 aa)
initn: 591 init1: 567 opt: 593 Z-score: 574.3 bits: 114.7 E(85289): 3e-25
Smith-Waterman score: 593; 44.3% identity (72.9% similar) in 210 aa overlap (204-408:58-267)
180 190 200 210 220
pF1KB7 MASLITAETCAKLEPEDADENIDVTSNDPEFPSSPYSSS--SPC---GLDSIHETSARLL
.:.: ..:. .: :...: : .::.:
NP_001 HGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIENICELAARML
30 40 50 60 70 80
230 240 250 260 270 280
pF1KB7 FMAVKWAKNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGG
: ::.::.:.: : .: . ::: ::. .:::::.:.: : :.:: :::: :.
NP_001 FSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPM
90 100 110 120 130 140
290 300 310 320 330 340
pF1KB7 AQGRLTLASMETRVLQETISRFRALAVDPTEFACMKALVLFKPETRGLKDPEHVEALQDQ
. :.. . :..:: . ...:: :: .:..:.::.::: .. ::.: :::.::..
NP_001 SADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFTSDACGLSDVAHVESLQEK
150 160 170 180 190 200
350 360 370 380 390 400
pF1KB7 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF
:: : .. ....:.::.::::::: ::::: ... :: ::: . .:.::.: :. ::.
NP_001 SQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDML
210 220 230 240 250 260
410
pF1KB7 KN
NP_001 LSGSSFNWPYMAIQ
270 280
410 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 05:28:43 2016 done: Sun Nov 6 05:28:44 2016
Total Scan time: 9.980 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]