FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7681, 343 aa
  1>>>pF1KB7681 343 - 343 aa - 343 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5262+/-0.000957; mu= 0.5069+/- 0.058
 mean_var=350.5316+/-70.792, 0's: 0 Z-trim(117.4): 133  B-trim: 168 in 1/50
 Lambda= 0.068503
 statistics sampled from 18019 (18167) to 18019 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.838), E-opt: 0.2 (0.558), width:  16
 Scan time:  2.940

The best scores are:                                      opt bits E(32554)
CCDS819.1 ALX3 gene_id:257|Hs108|chr1              ( 343) 2468 256.9 1.8e-68
CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11         ( 411)  721 84.3 1.9e-16
CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12           ( 326)  686 80.7 1.8e-15


>>CCDS819.1 ALX3 gene_id:257|Hs108|chr1                   (343 aa)
 initn: 2468 init1: 2468 opt: 2468  Z-score: 1342.8  bits: 256.9 E(32554): 1.8e-68
Smith-Waterman score: 2468; 100.0% identity (100.0% similar) in 343 aa overlap (1-343:1-343)

               10        20        30        40        50        60
pF1KB7 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 MDPEHCAPFRVGPAPGPYVASGDEPPGPQGTPAAAPHLHPAPPRGPRLTRFPACGPLEPY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFPQLPLDCRGGPRDGPSN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 LQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 YAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS81 QLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVPAPSAAHPGIYSI
              250       260       270       280       290       300

              310       320       330       340   
pF1KB7 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
       :::::::::::::::::::::::::::::::::::::::::::
CCDS81 HGFPPTLGGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
              310       320       330       340   

>>CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11              (411 aa)
 initn: 681 init1: 583 opt: 721  Z-score: 408.8  bits: 84.3 E(32554): 1.9e-16
Smith-Waterman score: 731; 41.1% identity (63.1% similar) in 360 aa overlap (8-343:76-411)

                                      10         20          30    
pF1KB7                        MDPEHCAPFRVGP-APGPYVASGDEP--PGPQGTPAA
                                     :.. :  : : .     .:  : ::  :  
CCDS31 TFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSFNKFQPQPSTPQPQPPPQP
          50        60        70        80        90       100     

              40         50        60        70        80          
pF1KB7 APHLH---PAPPRGPRL-TRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHF--YE
        :. .   : ::  :.:  .  ::            ::   :. :  :   ..::    .
CCDS31 QPQQQQPQPQPPAQPHLYLQRGAC----------KTPPDGSLK-LQEG---SSGHSAALQ
         110       120                 130        140          150 

       90       100       110       120            130       140   
pF1KB7 GPAEAEEKTSKAASFPQLPLDCRGGPRDGPSNLQ----GSPGPC-LASLHLPLSPGLPDS
        :  :.:..    . :.:: :      :. : :.    :  ::   ::  :: ::   ..
CCDS31 VPCYAKESS---LGEPELPPDSDTVGMDS-SYLSVKEAGVKGPQDRASSDLP-SP--LEK
             160          170        180       190        200      

           150       160       170       180       190       200   
pF1KB7 MELAKNKSKKRRNRTTFSTFQLEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQN
        .  .::.:::::::::...::::::::::::::::::::::::.:::::::::::::::
CCDS31 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
          210       220       230       240       250       260    

           210       220       230       240        250       260  
pF1KB7 RRAKWRKRERYGKIQEGRNPFTAAYDISVLPRTDSHPQLQNSLW-ASPGSGSPGGPCLVS
       ::::::::::.:..:. :. :..::.. .: :.... :.::  : .. :..::   :.: 
CCDS31 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
          270       280       290       300       310       320    

            270       280           290            300       310   
pF1KB7 PEGIPSPCMSPYSHPHGS----VAGFMGVPAPSA----AHPG-IYSIHGFPPTLGGHSFE
        . .:. ::::..:: ::    :. :..: . ..    .: : ...  .. : :.:  .:
CCDS31 CDPVPA-CMSPHAHPPGSGASSVTDFLSVSGAGSHVGQTHMGSLFGAASLSPGLNG--YE
          330        340       350       360       370         380 

           320       330       340   
pF1KB7 PSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
        ... : :. :...::.: ::  . ..:.:
CCDS31 LNGEPDRKTSSIAALRMKAKEHSAAISWAT
             390       400       410 

>>CCDS9028.1 ALX1 gene_id:8092|Hs108|chr12                (326 aa)
 initn: 704 init1: 578 opt: 686  Z-score: 391.2  bits: 80.7 E(32554): 1.8e-15
Smith-Waterman score: 686; 52.9% identity (75.0% similar) in 208 aa overlap (140-341:119-324)

     110       120       130       140       150       160         
pF1KB7 CRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQLEELE
                                     : :. .   ..:::::.::::...::::::
CCDS90 HTELNRAMDNCNSLRMSPVKGMQEKGELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELE
       90       100       110       120       130       140        

     170       180       190       200       210       220         
pF1KB7 KVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPFTAAYD
       ::::::::::::.::::::::.::::::::::::::::::::::::.::.... :.:.::
CCDS90 KVFQKTHYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYGQIQQAKSHFAATYD
      150       160       170       180       190       200        

     230       240       250        260       270       280        
pF1KB7 ISVLPRTDSHPQLQNSLWASPGSG-SPGGPCLVSPEGIPSPCMSPYSHPHGSVAGFMGVP
       :::::::::.::.::.:::. .:: :    :.. :.   : ::.::::   . ... :  
CCDS90 ISVLPRTDSYPQIQNNLWAGNASGGSVVTSCML-PRDTSS-CMTPYSHSPRTDSSYTGFS
      210       220       230       240         250       260      

      290       300            310       320       330       340   
pF1KB7 APSAAHPGIYSIHGFPPTL-----GGHSFEPSSDGDYKSPSLVSLRVKPKEPPGLLNWTT
         .     .   . :  .:     .::.:: . . . .: :.. ::.: ::  . ..:  
CCDS90 NHQNQFSHVPLNNFFTDSLLTGATNGHAFETKPEFERRSSSIAVLRMKAKEHTANISWAM
        270       280       290       300       310       320      




343 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 16:57:07 2016 done: Mon Nov  7 16:57:08 2016
 Total Scan time:  2.940 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]