FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7678, 406 aa
  1>>>pF1KB7678 406 - 406 aa - 406 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 12.9303+/-0.00139; mu= -10.5606+/- 0.085
 mean_var=801.6819+/-160.299, 0's: 0 Z-trim(116.3): 161  B-trim: 0 in 0/54
 Lambda= 0.045297
 statistics sampled from 16738 (16888) to 16738 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.775), E-opt: 0.2 (0.519), width:  16
 Scan time:  3.590

The best scores are:                                      opt bits E(32554)
CCDS14516.1 ESX1 gene_id:80712|Hs108|chrX          ( 406) 2970 208.8 7.4e-54


>>CCDS14516.1 ESX1 gene_id:80712|Hs108|chrX               (406 aa)
 initn: 2970 init1: 2970 opt: 2970  Z-score: 1080.4  bits: 208.8 E(32554): 7.4e-54
Smith-Waterman score: 2970; 100.0% identity (100.0% similar) in 406 aa overlap (1-406:1-406)

               10        20        30        40        50        60
pF1KB7 MESLRGYTHSDIGYRSLAVGEDIEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MESLRGYTHSDIGYRSLAVGEDIEEVNDEKLTVTSLMARGGEDEENTRSKPEYGTEAENN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 VGTEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 VGTEGSVPSDDQDREGGGGHEPEQQQEEPPLTKPEQQQEEPPLLELKQEQEEPPQTTVEG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PQPAEGPQTAEGPQPPERKRRRRTAFTQFQLQELENFFDESQYPDVVARERLAARLNLTE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 DRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVHLVPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 DRVQVWFQNRRAKWKRNQRVLMLRNTATADLAHPLDMFLGGAYYAAPALDPALCVHLVPQ
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 LPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 LPRPPVLPVPPMPPRPPMVPMPPRPPIAPMPPMAPVPPGSRMAPVPPGPRMAPVPPWPPM
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 APVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 APVPPWPPMAPVPTGPPMAPVPPGPPMARVPPGPPMARVPPGPPMAPLPPGPPMAPLPPG
              310       320       330       340       350       360

              370       380       390       400      
pF1KB7 PPMAPLPPGPPMAPLPPRSHVPHTGLAPVHITWAPVINSYYACPFF
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 PPMAPLPPGPPMAPLPPRSHVPHTGLAPVHITWAPVINSYYACPFF
              370       380       390       400      




406 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 07:19:40 2016 done: Thu Nov  3 07:19:41 2016
 Total Scan time:  3.590 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]