FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7673, 340 aa
  1>>>pF1KB7673 340 - 340 aa - 340 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.0455+/-0.000807; mu= 3.8772+/- 0.049
 mean_var=283.8792+/-57.483, 0's: 0 Z-trim(117.7): 11  B-trim: 212 in 2/52
 Lambda= 0.076122
 statistics sampled from 18511 (18521) to 18511 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.829), E-opt: 0.2 (0.569), width:  16
 Scan time:  2.740

The best scores are:                                      opt bits E(32554)
CCDS31863.1 PAWR gene_id:5074|Hs108|chr12          ( 340) 2212 255.2 5.8e-68


>>CCDS31863.1 PAWR gene_id:5074|Hs108|chr12               (340 aa)
 initn: 2212 init1: 2212 opt: 2212  Z-score: 1333.7  bits: 255.2 E(32554): 5.8e-68
Smith-Waterman score: 2212; 99.4% identity (99.7% similar) in 340 aa overlap (1-340:1-340)

               10        20        30        40        50        60
pF1KB7 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MATGGYRTSSGLGGSTTDFLEEWKAKREKMRAKQNPPGPAPPGGGSSDAAGKPPAGALGT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PAAAAANELNNNLPGGARAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
       ::::::::::::::::: ::::::::::::::::::::::::::::::::::::::::::
CCDS31 PAAAAANELNNNLPGGAPAAPAVPGPGGVNCAVGSAMLTRAAPGPRRSEDEPPAASASAA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PPPQRDEEEPDGVPEKGKSSGPSARKGKGQIEKRKLREKRRSTGVVNIPAAECLDEYEDD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 EAGQKERKREDAITQQNTMQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS31 EAGQKERKREDAITQQNTIQNEAVNLLDPGSSYLLQEPPRTVSGRYKSTTSVSEEDVSSR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 YSRTDRSGFPRYNRDANVSGTLVSSSTLEKKIEDLEKEVVRERQENLRLVRLMQDKEEMI
              250       260       270       280       290       300

              310       320       330       340
pF1KB7 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
       ::::::::::::::::::::::::::::::::::::::::
CCDS31 GKLKEEIDLLNRDLDDIEDENEQLKQENKTLLKVVGQLTR
              310       320       330       340




340 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 12:28:25 2016 done: Sun Nov  6 12:28:25 2016
 Total Scan time:  2.740 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]