Result of FASTA (ccds) for
pFN21AB7616
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7616, 361 aa
1>>>pF1KB7616 361 - 361 aa - 361 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.6833+/-0.000742; mu= 12.1742+/- 0.045
mean_var=145.2232+/-29.780, 0's: 0 Z-trim(113.8): 185 B-trim: 10 in 1/51
Lambda= 0.106428
statistics sampled from 14168 (14379) to 14168 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.776), E-opt: 0.2 (0.442), width: 16
Scan time: 3.100
The best scores are: opt bits E(32554)
CCDS9827.1 VSX2 gene_id:338917|Hs108|chr14 ( 361) 2387 377.6 9.1e-105
CCDS13168.1 VSX1 gene_id:30813|Hs108|chr20 ( 365) 764 128.4 9.5e-30
CCDS58767.1 VSX1 gene_id:30813|Hs108|chr20 ( 301) 697 118.0 1e-26
CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11 ( 411) 396 71.9 1.1e-12
CCDS819.1 ALX3 gene_id:257|Hs108|chr1 ( 343) 357 65.9 5.9e-11
>>CCDS9827.1 VSX2 gene_id:338917|Hs108|chr14 (361 aa)
initn: 2387 init1: 2387 opt: 2387 Z-score: 1994.4 bits: 377.6 E(32554): 9.1e-105
Smith-Waterman score: 2387; 100.0% identity (100.0% similar) in 361 aa overlap (1-361:1-361)
10 20 30 40 50 60
pF1KB7 MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 MTGKAGEALSKPKSETVAKSTSGGAPARCTGFGIQEILGLNKEPPSSHPRAALDGLAPGH
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LLAARSVLSPAGVGGMGLLGPGGLPGFYTQPTFLEVLSDPQSVHLQPLGRASGPLDTSQT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 ASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSA
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 KDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 KDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPKLDKMEQDERGPDAQAAISQEE
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 LRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRPAERLSPPQLEDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS98 LRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEEEEAMDEDRPAERLSPPQLEDM
310 320 330 340 350 360
pF1KB7 A
:
CCDS98 A
>>CCDS13168.1 VSX1 gene_id:30813|Hs108|chr20 (365 aa)
initn: 776 init1: 701 opt: 764 Z-score: 647.5 bits: 128.4 E(32554): 9.5e-30
Smith-Waterman score: 816; 46.1% identity (65.3% similar) in 369 aa overlap (1-337:1-359)
10 20 30 40 50
pF1KB7 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKE-PPSSHPR--AALDG
:::. ..:: .. . : . ::.: .: ::.: ..:::. : : . : .. .:
CCDS13 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG
10 20 30 40 50
60 70 80 90 100
pF1KB7 LA----PGHLLAARSVLSPAGVGGMGLL-GPGGLPGFYTQPTFLEVLSD-----PQSVH-
: :: : . :. : :.::: : : : .. : .:.: :.. .
CCDS13 PAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCL-LLADVPFLPPRGPEP
60 70 80 90 100 110
110 120 130 140 150
pF1KB7 LQPLGRASGP-----LDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQ
::. . : :...:...:: .: ::. : : :::::::::.::..:
CCDS13 AAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLK-ASPTLGKRKKRRHRTVFTAHQ
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB7 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEY
::::::::.::::::::::::::.::::::::::::::::::::::::: :: :::::::
CCDS13 LEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEY
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 GLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPK
::::::::: ::::.:.:.::. :.. :::::::::::::. ::: : .. :
CCDS13 GLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLGMHKKSMGMI----RKP-GSEDKLAG
240 250 260 270 280 290
280 290 300 310 320
pF1KB7 L---DKME----QDERGPD-AQAAISQEELRENSIAVLRAKAQEHSTKV---LGTVSGPD
: :... :.: : . .. .: :. :. : ..:.... :: :. .: .
CCDS13 LWGSDHFKEGSSQSESGSQRGSDKVSPENGLEDVAIDLSSSARQETKKVHPGAGAQGGSN
300 310 320 330 340 350
330 340 350 360
pF1KB7 SLARSTEKPEEEEAMDEDRPAERLSPPQLEDMA
: : .:
CCDS13 STALEGPQPGKVGAT
360
>>CCDS58767.1 VSX1 gene_id:30813|Hs108|chr20 (301 aa)
initn: 731 init1: 656 opt: 697 Z-score: 593.0 bits: 118.0 E(32554): 1e-26
Smith-Waterman score: 749; 51.5% identity (69.7% similar) in 274 aa overlap (1-253:1-269)
10 20 30 40 50
pF1KB7 MTGKAGEALSKPKSETVAKSTSGGAP--ARCTGFGIQEILGLNKE-PPSSHPR--AALDG
:::. ..:: .. . : . ::.: .: ::.: ..:::. : : . : .. .:
CCDS58 MTGR--DSLSDGRTSSRAL-VPGGSPRGSRPRGFAITDLLGLEAELPAPAGPGQGSGCEG
10 20 30 40 50
60 70 80 90 100
pF1KB7 LA----PGHLLAARSVLSPAGVGGMGLL-GPGGLPGFYTQPTFLEVLSD-----PQSVH-
: :: : . :. : :.::: : : : .. : .:.: :.. .
CCDS58 PAVAPCPGPGLDGSSLARGALPLGLGLLCGFGTQPPAAARAPCL-LLADVPFLPPRGPEP
60 70 80 90 100 110
110 120 130 140 150
pF1KB7 LQPLGRASGP-----LDTSQTASSDSEDVSSSDRKMSKSALNQTKKRKKRRHRTIFTSYQ
::. . : :...:...:: .: ::. :.. :::::::::.::..:
CCDS58 AAPLAPSRPPPALGRQKRSDSVSTSDEDSQSEDRNDLKAS-PTLGKRKKRRHRTVFTAHQ
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB7 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCWGRSSVMAEY
::::::::.::::::::::::::.::::::::::::::::::::::::: :: :::::::
CCDS58 LEELEKAFSEAHYPDVYAREMLAVKTELPEDRIQVWFQNRRAKWRKREKRWGGSSVMAEY
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB7 GLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGERQALPK
::::::::: ::::.:.:.::. :.. :::::::
CCDS58 GLYGAMVRHCIPLPDSVLNSAEGGLLGSCAPWLLVQTSAPGGSRSLDFAGDTQAPQTPWW
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB7 LDKMEQDERGPDAQAAISQEELRENSIAVLRAKAQEHSTKVLGTVSGPDSLARSTEKPEE
CCDS58 CLMTFS
300
>>CCDS31468.1 ALX4 gene_id:60529|Hs108|chr11 (411 aa)
initn: 452 init1: 355 opt: 396 Z-score: 341.5 bits: 71.9 E(32554): 1.1e-12
Smith-Waterman score: 402; 38.2% identity (61.4% similar) in 220 aa overlap (6-208:58-274)
10 20 30
pF1KB7 MTGKAGEALSKPK----SETVAKSTSGGAPARCT-
:.: :. . .. .: .:: :: .
CCDS31 REGSSPFRAFPGGDKFGTTFLSAAAKAQGFGDAKSRARYGAGQQDLATPLESGAGARGSF
30 40 50 60 70 80
40 50 60 70 80
pF1KB7 -GFGIQEILGLNKEPPSSHPRAALDGLAPG---HLLAARSVLSPAGVGGMGLL-GPGGLP
: : . ::. .:. : :: :.. . :.. : : .:
CCDS31 NKFQPQPSTPQPQPPPQPQPQQQQPQPQPPAQPHLYLQRGACKTPPDGSLKLQEGSSGHS
90 100 110 120 130 140
90 100 110 120 130
pF1KB7 GFYTQPTFLE--VLSDPQSVHLQP----LGRASGPLDTSQTASSDSEDVSSSDRKMS-KS
. : . . :..:. : : .: :. :...... . .: .::: ..
CCDS31 AALQVPCYAKESSLGEPE---LPPDSDTVGMDSSYLSVKEAGVKGPQDRASSDLPSPLEK
150 160 170 180 190 200
140 150 160 170 180 190
pF1KB7 ALNQTKKRKKRRHRTIFTSYQLEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQN
: ....: ::::.:: :::::::::::.:...:::::::::.:::.:.: : :.::::::
CCDS31 ADSESNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQN
210 220 230 240 250 260
200 210 220 230 240 250
pF1KB7 RRAKWRKREKCWGRSSVMAEYGLYGAMVRHSIPLPESILKSAKDGIMDSCAPWLLGMHKK
:::::::::.
CCDS31 RRAKWRKRERFGQMQQVRTHFSTAYELPLLTRAENYAQIQNPSWLGNNGAASPVPACVVP
270 280 290 300 310 320
>>CCDS819.1 ALX3 gene_id:257|Hs108|chr1 (343 aa)
initn: 331 init1: 331 opt: 357 Z-score: 310.1 bits: 65.9 E(32554): 5.9e-11
Smith-Waterman score: 369; 43.6% identity (62.0% similar) in 179 aa overlap (79-243:75-253)
50 60 70 80 90 100
pF1KB7 PRAALDGLAPGHLLAARSVLSPAGVGGMGLLGPG-GLPG--FYTQPTFLEV-LSDPQSVH
:::: .: : :: :. : : :
CCDS81 GPRLTRFPACGPLEPYLPEPAKPPAKYLQDLGPGPALNGGHFYEGPAEAEEKTSKAASFP
50 60 70 80 90 100
110 120 130 140 150
pF1KB7 LQPLGRASGPLD-TSQTASSDSEDVSSSDRKMSKS---ALNQTK-KRKKRRHRTIFTSYQ
:: .:: : :. .: . ..: .: . ... .: : ::::.:: :...:
CCDS81 QLPLDCRGGPRDGPSNLQGSPGPCLASLHLPLSPGLPDSMELAKNKSKKRRNRTTFSTFQ
110 120 130 140 150 160
160 170 180 190 200 210
pF1KB7 LEELEKAFNEAHYPDVYAREMLAMKTELPEDRIQVWFQNRRAKWRKREKCW----GRSSV
::::::.:...:::::::::.::..:.: : :.:::::::::::::::. ::.
CCDS81 LEELEKVFQKTHYPDVYAREQLALRTDLTEARVQVWFQNRRAKWRKRERYGKIQEGRNPF
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB7 MAEYGLYGAMVRHSIP-LPESILKSAKDGIMDSCAPWLLGMHKKSLEAAAESGRKPEGER
: : . : : : .:. : .:
CCDS81 TAAYDISVLPRTDSHPQLQNSLWASPGSGSPGGPCLVSPEGIPSPCMSPYSHPHGSVAGF
230 240 250 260 270 280
361 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:41:29 2016 done: Sun Nov 6 04:41:30 2016
Total Scan time: 3.100 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]