Result of FASTA (omim) for
pFN21AB7608
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7608, 357 aa
1>>>pF1KB7608 357 - 357 aa - 357 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4504+/-0.000346; mu= 17.0732+/- 0.022
mean_var=84.6992+/-17.505, 0's: 0 Z-trim(116.0): 412 B-trim: 753 in 1/51
Lambda= 0.139359
statistics sampled from 26469 (26886) to 26469 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.688), E-opt: 0.2 (0.315), width: 16
Scan time: 8.610
The best scores are: opt bits E(85289)
NP_001070950 (OMIM: 603881) nuclear receptor subfa ( 357) 2403 492.7 5.2e-139
XP_005245754 (OMIM: 603881) PREDICTED: nuclear rec ( 353) 2360 484.1 2.1e-136
NP_001070948 (OMIM: 603881) nuclear receptor subfa ( 352) 2350 482.1 8.3e-136
XP_005245750 (OMIM: 603881) PREDICTED: nuclear rec ( 429) 2145 440.9 2.5e-123
NP_001070940 (OMIM: 603881) nuclear receptor subfa ( 324) 2102 432.2 7.9e-121
NP_001070937 (OMIM: 603881) nuclear receptor subfa ( 340) 2091 430.0 3.8e-120
XP_005245751 (OMIM: 603881) PREDICTED: nuclear rec ( 424) 2092 430.2 3.9e-120
NP_001070946 (OMIM: 603881) nuclear receptor subfa ( 339) 2081 428.0 1.5e-119
NP_001070941 (OMIM: 603881) nuclear receptor subfa ( 315) 1876 386.7 3.7e-107
NP_001070944 (OMIM: 603881) nuclear receptor subfa ( 311) 1833 378.1 1.5e-104
NP_005113 (OMIM: 603881) nuclear receptor subfamil ( 348) 1832 377.9 1.8e-104
NP_001070939 (OMIM: 603881) nuclear receptor subfa ( 309) 1595 330.2 3.7e-90
NP_001070942 (OMIM: 603881) nuclear receptor subfa ( 296) 1591 329.4 6.3e-90
NP_001070949 (OMIM: 603881) nuclear receptor subfa ( 314) 1581 327.4 2.6e-89
NP_001070945 (OMIM: 603881) nuclear receptor subfa ( 306) 1579 327.0 3.4e-89
NP_001070947 (OMIM: 603881) nuclear receptor subfa ( 319) 1574 326.0 7.1e-89
NP_001070938 (OMIM: 603881) nuclear receptor subfa ( 280) 1337 278.3 1.4e-74
NP_001070943 (OMIM: 603881) nuclear receptor subfa ( 267) 1333 277.5 2.4e-74
XP_011508539 (OMIM: 603881) PREDICTED: nuclear rec ( 386) 1323 275.6 1.3e-73
XP_005252767 (OMIM: 602423) PREDICTED: oxysterols ( 402) 493 108.7 2.3e-23
XP_006718178 (OMIM: 602423) PREDICTED: oxysterols ( 402) 493 108.7 2.3e-23
XP_005252766 (OMIM: 602423) PREDICTED: oxysterols ( 402) 493 108.7 2.3e-23
NP_001123574 (OMIM: 602423) oxysterols receptor LX ( 402) 493 108.7 2.3e-23
XP_016872547 (OMIM: 602423) PREDICTED: oxysterols ( 402) 493 108.7 2.3e-23
XP_006718179 (OMIM: 602423) PREDICTED: oxysterols ( 402) 493 108.7 2.3e-23
XP_011518107 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
XP_005252762 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
XP_006718175 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
XP_005252763 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
XP_005252764 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
NP_005684 (OMIM: 602423) oxysterols receptor LXR-a ( 447) 493 108.8 2.4e-23
XP_006718176 (OMIM: 602423) PREDICTED: oxysterols ( 447) 493 108.8 2.4e-23
NP_001238863 (OMIM: 602423) oxysterols receptor LX ( 453) 493 108.8 2.5e-23
NP_001238864 (OMIM: 602423) oxysterols receptor LX ( 453) 493 108.8 2.5e-23
XP_011537022 (OMIM: 166710,277440,601769) PREDICTE ( 427) 479 106.0 1.7e-22
NP_001017535 (OMIM: 166710,277440,601769) vitamin ( 427) 479 106.0 1.7e-22
NP_000367 (OMIM: 166710,277440,601769) vitamin D3 ( 427) 479 106.0 1.7e-22
XP_006719650 (OMIM: 166710,277440,601769) PREDICTE ( 427) 479 106.0 1.7e-22
NP_001017536 (OMIM: 166710,277440,601769) vitamin ( 477) 479 106.0 1.8e-22
NP_005114 (OMIM: 603826,617049) bile acid receptor ( 472) 456 101.4 4.4e-21
NP_001193921 (OMIM: 603826,617049) bile acid recep ( 482) 456 101.4 4.5e-21
NP_001193906 (OMIM: 603826,617049) bile acid recep ( 476) 449 100.0 1.2e-20
NP_001193908 (OMIM: 603826,617049) bile acid recep ( 476) 449 100.0 1.2e-20
XP_011537342 (OMIM: 603826,617049) PREDICTED: bile ( 476) 449 100.0 1.2e-20
NP_001193922 (OMIM: 603826,617049) bile acid recep ( 486) 449 100.0 1.2e-20
NP_001269380 (OMIM: 601998) steroid hormone recept ( 422) 439 97.9 4.3e-20
NP_001269379 (OMIM: 601998) steroid hormone recept ( 423) 436 97.3 6.6e-20
NP_004442 (OMIM: 601998) steroid hormone receptor ( 423) 436 97.3 6.6e-20
XP_016872802 (OMIM: 601998) PREDICTED: steroid hor ( 433) 436 97.3 6.7e-20
NP_148934 (OMIM: 603065) nuclear receptor subfamil ( 397) 423 94.7 3.8e-19
>>NP_001070950 (OMIM: 603881) nuclear receptor subfamily (357 aa)
initn: 2403 init1: 2403 opt: 2403 Z-score: 2616.7 bits: 492.7 E(85289): 5.2e-139
Smith-Waterman score: 2403; 100.0% identity (100.0% similar) in 357 aa overlap (1-357:1-357)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
310 320 330 340 350
>>XP_005245754 (OMIM: 603881) PREDICTED: nuclear recepto (353 aa)
initn: 1586 init1: 1586 opt: 2360 Z-score: 2570.0 bits: 484.1 E(85289): 2.1e-136
Smith-Waterman score: 2360; 98.9% identity (98.9% similar) in 357 aa overlap (1-357:1-353)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
XP_005 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQV
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
300 310 320 330 340 350
>>NP_001070948 (OMIM: 603881) nuclear receptor subfamily (352 aa)
initn: 1860 init1: 1860 opt: 2350 Z-score: 2559.2 bits: 482.1 E(85289): 8.3e-136
Smith-Waterman score: 2350; 98.6% identity (98.6% similar) in 357 aa overlap (1-357:1-352)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALT
250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
300 310 320 330 340 350
>>XP_005245750 (OMIM: 603881) PREDICTED: nuclear recepto (429 aa)
initn: 2145 init1: 2145 opt: 2145 Z-score: 2335.3 bits: 440.9 E(85289): 2.5e-123
Smith-Waterman score: 2145; 100.0% identity (100.0% similar) in 322 aa overlap (36-357:108-429)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
XP_005 EENQQQRGSLGRGIPYQILWPAGDMLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
200 210 220 230 240 250
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
260 270 280 290 300 310
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
320 330 340 350 360 370
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
380 390 400 410 420
>>NP_001070940 (OMIM: 603881) nuclear receptor subfamily (324 aa)
initn: 1328 init1: 1328 opt: 2102 Z-score: 2290.2 bits: 432.2 E(85289): 7.9e-121
Smith-Waterman score: 2102; 98.8% identity (98.8% similar) in 322 aa overlap (36-357:7-324)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
NP_001 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
280 290 300 310 320
>>NP_001070937 (OMIM: 603881) nuclear receptor subfamily (340 aa)
initn: 1586 init1: 1586 opt: 2091 Z-score: 2278.0 bits: 430.0 E(85289): 3.8e-120
Smith-Waterman score: 2091; 98.7% identity (98.7% similar) in 315 aa overlap (1-315:1-311)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
:::::::::::::::::::::::::::::::::::::::::::::::::::: ::::
NP_001 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQV
190 200 210 220 230
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::
NP_001 LQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
300 310 320 330 340
>>XP_005245751 (OMIM: 603881) PREDICTED: nuclear recepto (424 aa)
initn: 1602 init1: 1602 opt: 2092 Z-score: 2277.7 bits: 430.2 E(85289): 3.9e-120
Smith-Waterman score: 2092; 98.4% identity (98.4% similar) in 322 aa overlap (36-357:108-424)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
XP_005 EENQQQRGSLGRGIPYQILWPAGDMLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
80 90 100 110 120 130
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
140 150 160 170 180 190
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
200 210 220 230 240 250
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
260 270 280 290 300 310
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::: ::::::::::::::::::::::::::
XP_005 LFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALTLQSYI
320 330 340 350 360 370
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
380 390 400 410 420
>>NP_001070946 (OMIM: 603881) nuclear receptor subfamily (339 aa)
initn: 1860 init1: 1860 opt: 2081 Z-score: 2267.1 bits: 428.0 E(85289): 1.5e-119
Smith-Waterman score: 2081; 98.4% identity (98.4% similar) in 315 aa overlap (1-315:1-310)
10 20 30 40 50 60
pF1KB7 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MASREDELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHCPACRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HTRHMGTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFRSLPIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALT
:::::::::::::::::::::::::::::::::: :::::::::::::::::::::
NP_001 EFLELLFHFHGTLRKLQLQEPEYVLLAAMALFSP-----DRPGVTQRDEIDQLQEEMALT
250 260 270 280 290
310 320 330 340 350
pF1KB7 LQSYIKGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
:::::::::::::::
NP_001 LQSYIKGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
300 310 320 330
>>NP_001070941 (OMIM: 603881) nuclear receptor subfamily (315 aa)
initn: 1876 init1: 1876 opt: 1876 Z-score: 2044.8 bits: 386.7 E(85289): 3.7e-107
Smith-Waterman score: 1876; 100.0% identity (100.0% similar) in 280 aa overlap (36-315:7-286)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
NP_001 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::
NP_001 KGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
280 290 300 310
>>NP_001070944 (OMIM: 603881) nuclear receptor subfamily (311 aa)
initn: 1328 init1: 1328 opt: 1833 Z-score: 1998.2 bits: 378.1 E(85289): 1.5e-104
Smith-Waterman score: 1833; 98.6% identity (98.6% similar) in 280 aa overlap (36-315:7-282)
10 20 30 40 50 60
pF1KB7 DELRNCVVCGDQATGYHFNALTCEGCKGFFRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
::::::::::::::::::::::::::::::
NP_001 MLPKRSRRTVSKSIGPTCPFAGSCEVSKTQRRHCPA
10 20 30
70 80 90 100 110 120
pF1KB7 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CRLQKCLDAGMRKDMILSAEALALRRAKQAQRRAQQTPVQLSKEQEELIRTLLGAHTRHM
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB7 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GTMFEQFVQFRPPAHLFIHHQPLPTLAPVLPLVTHFADINTFMVLQVIKFTKDLPVFRSL
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB7 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARVSPTVGFQVEFLEL
::::::::::::::::::::::::::::::::::::::::::::::: :::::::::
NP_001 PIEDQISLLKGAAVEICHIVLNTTFCLQTQNFLCGPLRYTIEDGARV----GFQVEFLEL
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB7 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFHFHGTLRKLQLQEPEYVLLAAMALFSPAPYLTDRPGVTQRDEIDQLQEEMALTLQSYI
220 230 240 250 260 270
310 320 330 340 350
pF1KB7 KGQQRRPRDRFLYAKLLGLLAELRSINEAYGYQIQHIQGLSAMMPLLQEICS
::::::::::
NP_001 KGQQRRPRDRSPGTPWIHWSGKMLGPKIGPGSKGAQWLQ
280 290 300 310
357 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 18:51:35 2016 done: Sun Nov 6 18:51:37 2016
Total Scan time: 8.610 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]