Result of FASTA (omim) for
pFN21AB7606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7606, 356 aa
1>>>pF1KB7606 356 - 356 aa - 356 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0718+/-0.000325; mu= 23.1688+/- 0.021
mean_var=190.2542+/-40.737, 0's: 0 Z-trim(121.5): 370 B-trim: 2116 in 1/54
Lambda= 0.092984
statistics sampled from 37612 (38118) to 37612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.447), width: 16
Scan time: 8.920
The best scores are: opt bits E(85289)
NP_001001933 (OMIM: 604425) LIM/homeobox protein L ( 356) 2471 343.3 4.8e-94
NP_001243043 (OMIM: 604425) LIM/homeobox protein L ( 346) 2402 334.0 2.9e-91
XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 2234 311.5 1.8e-84
XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobo ( 363) 2234 311.5 1.8e-84
NP_001229262 (OMIM: 608215) LIM/homeobox protein L ( 366) 1412 201.3 2.9e-51
NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 377) 1412 201.3 2.9e-51
XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobo ( 378) 1378 196.7 6.8e-50
XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobo ( 407) 1378 196.8 7.1e-50
NP_001229263 (OMIM: 608215) LIM/homeobox protein L ( 363) 1366 195.1 2e-49
NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 ( 392) 1366 195.2 2.1e-49
XP_005251973 (OMIM: 608215) PREDICTED: LIM/homeobo ( 230) 831 123.0 6.6e-28
NP_001229264 (OMIM: 608215) LIM/homeobox protein L ( 176) 591 90.6 2.9e-18
XP_005263467 (OMIM: 221750,600577) PREDICTED: LIM/ ( 386) 455 72.9 1.3e-12
XP_016870657 (OMIM: 221750,600577) PREDICTED: LIM/ ( 373) 450 72.2 2e-12
NP_835258 (OMIM: 221750,600577) LIM/homeobox prote ( 397) 450 72.3 2.1e-12
NP_055379 (OMIM: 221750,600577) LIM/homeobox prote ( 402) 450 72.3 2.1e-12
NP_203129 (OMIM: 262700,602146) LIM/homeobox prote ( 390) 438 70.7 6.3e-12
XP_005245407 (OMIM: 606066) PREDICTED: LIM/homeobo ( 336) 427 69.1 1.6e-11
NP_665804 (OMIM: 609481) insulin gene enhancer pro ( 359) 426 69.0 1.9e-11
NP_002193 (OMIM: 600366) insulin gene enhancer pro ( 349) 425 68.8 2e-11
NP_002307 (OMIM: 161200,602575) LIM homeobox trans ( 395) 425 68.9 2.1e-11
NP_001167618 (OMIM: 161200,602575) LIM homeobox tr ( 402) 425 68.9 2.1e-11
NP_001167617 (OMIM: 161200,602575) LIM homeobox tr ( 406) 425 69.0 2.2e-11
XP_016877994 (OMIM: 609481) PREDICTED: insulin gen ( 534) 426 69.3 2.2e-11
XP_006717386 (OMIM: 603759) PREDICTED: LIM/homeobo ( 314) 417 67.7 4e-11
NP_071758 (OMIM: 605992) LIM/homeobox protein Lhx5 ( 402) 412 67.2 7.2e-11
NP_005559 (OMIM: 601999) LIM/homeobox protein Lhx1 ( 406) 405 66.3 1.4e-10
XP_011507842 (OMIM: 600298) PREDICTED: LIM homeobo ( 279) 402 65.6 1.5e-10
NP_001167540 (OMIM: 600298) LIM homeobox transcrip ( 382) 402 65.8 1.8e-10
NP_796372 (OMIM: 600298) LIM homeobox transcriptio ( 382) 402 65.8 1.8e-10
XP_005271348 (OMIM: 603129) PREDICTED: LIM domain ( 165) 387 63.2 4.8e-10
NP_006760 (OMIM: 603129) LIM domain transcription ( 165) 387 63.2 4.8e-10
XP_011518400 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 347 57.7 1.9e-08
XP_011518401 (OMIM: 186921) PREDICTED: rhombotin-1 ( 145) 347 57.7 1.9e-08
NP_001257357 (OMIM: 186921) rhombotin-1 isoform b ( 155) 347 57.8 1.9e-08
NP_002306 (OMIM: 186921) rhombotin-1 isoform a [Ho ( 156) 347 57.8 1.9e-08
XP_006718291 (OMIM: 186921) PREDICTED: rhombotin-1 ( 193) 347 57.9 2.1e-08
XP_011519064 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08
NP_061110 (OMIM: 180386) LIM domain only protein 3 ( 145) 340 56.8 3.6e-08
XP_011519065 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08
NP_001001395 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08
NP_001230538 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08
XP_006719174 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08
NP_001230539 (OMIM: 180386) LIM domain only protei ( 145) 340 56.8 3.6e-08
XP_006719173 (OMIM: 180386) PREDICTED: LIM domain ( 145) 340 56.8 3.6e-08
NP_001230540 (OMIM: 180386) LIM domain only protei ( 156) 340 56.8 3.7e-08
NP_001230541 (OMIM: 180386) LIM domain only protei ( 163) 340 56.9 3.8e-08
NP_005565 (OMIM: 180385) rhombotin-2 isoform 1 [Ho ( 227) 335 56.4 7.1e-08
XP_016873218 (OMIM: 180385) PREDICTED: rhombotin-2 ( 158) 320 54.1 2.4e-07
NP_001135788 (OMIM: 180385) rhombotin-2 isoform 2 ( 158) 320 54.1 2.4e-07
>>NP_001001933 (OMIM: 604425) LIM/homeobox protein Lhx8 (356 aa)
initn: 2471 init1: 2471 opt: 2471 Z-score: 1809.3 bits: 343.3 E(85289): 4.8e-94
Smith-Waterman score: 2471; 99.7% identity (100.0% similar) in 356 aa overlap (1-356:1-356)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
250 260 270 280 290 300
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
310 320 330 340 350
>>NP_001243043 (OMIM: 604425) LIM/homeobox protein Lhx8 (346 aa)
initn: 2402 init1: 2402 opt: 2402 Z-score: 1759.4 bits: 334.0 E(85289): 2.9e-91
Smith-Waterman score: 2402; 99.7% identity (100.0% similar) in 346 aa overlap (11-356:1-346)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
NP_001 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
300 310 320 330 340
>>XP_016856806 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa)
initn: 2233 init1: 2233 opt: 2234 Z-score: 1637.4 bits: 311.5 E(85289): 1.8e-84
Smith-Waterman score: 2234; 97.3% identity (98.8% similar) in 331 aa overlap (11-340:1-331)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMD-AHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::: .:. . . :
XP_016 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDDTHAAVHIHLPGRMWRFQGYSNNGSSSGS
300 310 320 330 340 350
XP_016 TLICKYNENIFLF
360
>>XP_016856805 (OMIM: 604425) PREDICTED: LIM/homeobox pr (363 aa)
initn: 2233 init1: 2233 opt: 2234 Z-score: 1637.4 bits: 311.5 E(85289): 1.8e-84
Smith-Waterman score: 2234; 97.3% identity (98.8% similar) in 331 aa overlap (11-340:1-331)
10 20 30 40 50 60
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSSSPR
10 20 30 40 50
70 80 90 100 110 120
pF1KB7 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCYIKDK
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB7 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEEFALV
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB7 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQLQVM
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB7 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAAPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
XP_016 QAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTAVPPS
240 250 260 270 280 290
310 320 330 340 350
pF1KB7 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMD-AHSPTTLGLQPLLPHSMTQLPISHT
::::::::::::::::::::::::::::::: .:. . . :
XP_016 RLSPPMLEEMAYSAYVPQDGTMLTALHSYMDDTHAAVHIHLPGRMWRFQGYSNNGSSSGS
300 310 320 330 340 350
XP_016 TLICKYNENIFLF
360
>>NP_001229262 (OMIM: 608215) LIM/homeobox protein Lhx6 (366 aa)
initn: 1381 init1: 881 opt: 1412 Z-score: 1041.5 bits: 201.3 E(85289): 2.9e-51
Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:26-365)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSS
: :: : . . .. . :: :.: ..
NP_001 MRRGLCRRSAENPDAGPVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQA
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 SAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVC
: : .::. :: : :: : :: .:.::::::.:.::::::.: :::::: ::::
NP_001 S-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVC
70 80 90 100 110
110 120 130 140 150 160
pF1KB7 RTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACF
:::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.:::::::::
NP_001 RTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACF
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB7 SCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPA
::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: ..::::
NP_001 SCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPA
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB7 KRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVS
:::::::::.::::::::::::::::::::::::. :::::::::::::::::::::: .
NP_001 KRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-T
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB7 PNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLP
:.: .: ..:::::: . ... :. . . . ...::.:...: ..: : : ::
NP_001 PQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL-PALP
300 310 320 330 340 350
350
pF1KB7 H---SMTQLPISHT
: . :::.:
NP_001 HLPVGAPQLPLSR
360
>>NP_954629 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (377 aa)
initn: 1381 init1: 881 opt: 1412 Z-score: 1041.4 bits: 201.3 E(85289): 2.9e-51
Smith-Waterman score: 1412; 60.8% identity (80.4% similar) in 347 aa overlap (15-354:37-376)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
: :: : . . .. . :: :.
NP_954 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL
: ..: : .::. :: : :: : :: .:.::::::.:.::::::.: ::::::
NP_954 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
:::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::
NP_954 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
:::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: .
NP_954 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
.:::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::
NP_954 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL
::: .:.: .: ..:::::: . ... :. . . . ...::.:...: ..: :
NP_954 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESHPFSVLTL
310 320 330 340 350 360
350
pF1KB7 QPLLPH---SMTQLPISHT
: ::: . :::.:
NP_954 -PALPHLPVGAPQLPLSR
370
>>XP_011516824 (OMIM: 608215) PREDICTED: LIM/homeobox pr (378 aa)
initn: 1358 init1: 881 opt: 1378 Z-score: 1016.7 bits: 196.7 E(85289): 6.8e-50
Smith-Waterman score: 1378; 59.8% identity (79.8% similar) in 341 aa overlap (15-351:8-342)
10 20 30 40 50
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSS---
: :: : . . .. . :: :.: ..: : .::.
XP_011 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS-PCTPSTPSV
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 -SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY
:: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::
XP_011 CSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 IKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEE
::.:.::::.::: :.::.:.::::.:...::::::.::.::::::::::::::::::::
XP_011 IKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 FALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQ
:.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.:
XP_011 FGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTA
:::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: ..
XP_011 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQHP--VPPSG
240 250 260 270 280
300 310 320 330 340 350
pF1KB7 APPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
:::::: . ... :. . . . ...::.:..... :. : . ::
XP_011 APPSRLPSALSDDIHYTPFSSPERARMVTLHGYIETNARLLAGMCDWCGHLIWQLQRIIP
290 300 310 320 330 340
XP_011 PQSLHYGAANNTADKAWMSPRASLQVIITFR
350 360 370
>>XP_011516823 (OMIM: 608215) PREDICTED: LIM/homeobox pr (407 aa)
initn: 1358 init1: 881 opt: 1378 Z-score: 1016.4 bits: 196.8 E(85289): 7.1e-50
Smith-Waterman score: 1378; 59.8% identity (79.8% similar) in 341 aa overlap (15-351:37-371)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
: :: : . . .. . :: :.
XP_011 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL
: ..: : .::. :: : :: : :: .:.::::::.:.::::::.: ::::::
XP_011 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
:::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::
XP_011 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
:::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: .
XP_011 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
.:::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::
XP_011 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL
::: .:.: .: ..:::::: . ... :. . . . ...::.:..... :.
XP_011 KKH-TPQHP--VPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIETNARLLAGM
310 320 330 340 350 360
350
pF1KB7 QPLLPHSMTQLPISHT
: . ::
XP_011 CDWCGHLIWQLQRIIPPQSLHYGAANNTADKAWMSPRASLQVIITFR
370 380 390 400
>>NP_001229263 (OMIM: 608215) LIM/homeobox protein Lhx6 (363 aa)
initn: 1337 init1: 881 opt: 1366 Z-score: 1008.1 bits: 195.1 E(85289): 2e-49
Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:8-324)
10 20 30 40 50
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDEDSCSSSAPLSPSS---
: :: : . . .. . :: :.: ..: : .::.
NP_001 MAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDKDEGQAS-PCTPSTPSV
10 20 30 40 50
60 70 80 90 100 110
pF1KB7 -SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCLSCSVCRTSLGRHTSCY
:: : :: : :: .:.::::::.:.::::::.: :::::: :::::::: ...:::
NP_001 CSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCLECSVCRTSLRQQNSCY
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB7 IKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLACFACFSCKRQLSTGEE
::.:.::::.::: :.::.:.::::.:...::::::.::.::::::::::::::::::::
NP_001 IKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLACFACFSCKRQLSTGEE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB7 FALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVNHPKPAKRARTSFTADQ
:.:::::::::.::: :..:::: .:::::...:::. .::: ..:::::::::::::.:
NP_001 FGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-SQPKPAKRARTSFTAEQ
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB7 LQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARHKKHVSPNHSSSTPVTA
:::::::::::::::::::::::. :::::::::::::::::::::: .:.: .: ..
NP_001 LQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARHKKH-TPQH--PVPPSG
240 250 260 270 280
300 310 320 330 340 350
pF1KB7 APPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGLQPLLPHSMTQLPISHT
:::::: . ... :. . . . ...::.:....
NP_001 APPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVHCRLPYTAPPVHLKADM
290 300 310 320 330 340
NP_001 DGPLSNRGEKVILFQY
350 360
>>NP_055183 (OMIM: 608215) LIM/homeobox protein Lhx6 iso (392 aa)
initn: 1337 init1: 881 opt: 1366 Z-score: 1007.9 bits: 195.2 E(85289): 2.1e-49
Smith-Waterman score: 1366; 61.9% identity (82.0% similar) in 323 aa overlap (15-333:37-353)
10 20 30 40
pF1KB7 MQILSRCQGLMSEECGRTTALAAGRTRKGAGEEGLVSPEGAGDE
: :: : . . .. . :: :.
NP_055 NAAPALPEGCRLPAEGGPATDQVMAQPGSGCKATTRCLEGTAPPAMAQSDAEALAGALDK
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB7 DSCSSSAPLSPSS----SPRSMASGSGCPPGKCVCNSCGLEIVDKYLLKVNDLCWHVRCL
: ..: : .::. :: : :: : :: .:.::::::.:.::::::.: ::::::
NP_055 DEGQAS-PCTPSTPSVCSPPSAAS-SVPSAGKNICSSCGLEILDRYLLKVNNLIWHVRCL
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB7 SCSVCRTSLGRHTSCYIKDKDIFCKLDYFRRYGTRCSRCGRHIHSTDWVRRAKGNVYHLA
:::::::: ...:::::.:.::::.::: :.::.:.::::.:...::::::.::.::::
NP_055 ECSVCRTSLRQQNSCYIKNKEIFCKMDYFSRFGTKCARCGRQIYASDWVRRARGNAYHLA
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB7 CFACFSCKRQLSTGEEFALVEEKVLCRVHYDCMLDNLKREVENGNGISVEGALLTEQDVN
:::::::::::::::::.:::::::::.::: :..:::: .:::::...:::. .::: .
NP_055 CFACFSCKRQLSTGEEFGLVEEKVLCRIHYDTMIENLKRAAENGNGLTLEGAVPSEQD-S
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB7 HPKPAKRARTSFTADQLQVMQAQFAQDNNPDAQTLQKLAERTGLSRRVIQVWFQNCRARH
.:::::::::::::.::::::::::::::::::::::::. :::::::::::::::::::
NP_055 QPKPAKRARTSFTAEQLQVMQAQFAQDNNPDAQTLQKLADMTGLSRRVIQVWFQNCRARH
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB7 KKHVSPNHSSSTPVTAAPPSRLSPPMLEEMAYSAYVPQDGTMLTALHSYMDAHSPTTLGL
::: .:.: .: ..:::::: . ... :. . . . ...::.:....
NP_055 KKH-TPQH--PVPPSGAPPSRLPSALSDDIHYTPFSSPERARMVTLHGYIESQVQCGQVH
310 320 330 340 350 360
350
pF1KB7 QPLLPHSMTQLPISHT
NP_055 CRLPYTAPPVHLKADMDGPLSNRGEKVILFQY
370 380 390
356 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 04:39:43 2016 done: Sun Nov 6 04:39:44 2016
Total Scan time: 8.920 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]