FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7579, 220 aa
  1>>>pF1KB7579 220 - 220 aa - 220 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.1686+/-0.000751; mu= 7.7409+/- 0.045
 mean_var=159.1795+/-32.745, 0's: 0 Z-trim(114.8): 13  B-trim: 0 in 0/53
 Lambda= 0.101655
 statistics sampled from 15346 (15353) to 15346 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.8), E-opt: 0.2 (0.472), width:  16
 Scan time:  1.870

The best scores are:                                      opt bits E(32554)
CCDS3817.1 SAP30 gene_id:8819|Hs108|chr4           ( 220) 1468 226.0 1.5e-59
CCDS4326.1 SAP30L gene_id:79685|Hs108|chr5         ( 183)  824 131.4 3.5e-31


>>CCDS3817.1 SAP30 gene_id:8819|Hs108|chr4                (220 aa)
 initn: 1468 init1: 1468 opt: 1468  Z-score: 1182.6  bits: 226.0 E(32554): 1.5e-59
Smith-Waterman score: 1468; 100.0% identity (100.0% similar) in 220 aa overlap (1-220:1-220)

               10        20        30        40        50        60
pF1KB7 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 MNGFTPDEMSRGGDAAAAVAAVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGAAG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 PGPGQLCCLREDGERCGRAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS38 SVRNRRKRKGSDDDGGDSPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVE
              130       140       150       160       170       180

              190       200       210       220
pF1KB7 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH
       ::::::::::::::::::::::::::::::::::::::::
CCDS38 IVGCHFRSIPVNEKDTLTYFIYSVKNDKNKSDLKVDSGVH
              190       200       210       220

>>CCDS4326.1 SAP30L gene_id:79685|Hs108|chr5              (183 aa)
 initn: 910 init1: 428 opt: 824  Z-score: 673.2  bits: 131.4 E(32554): 3.5e-31
Smith-Waterman score: 824; 71.9% identity (87.1% similar) in 171 aa overlap (51-218:10-179)

               30        40        50           60        70       
pF1KB7 AVVAAAAAAASAGNGTGAGTGAEVPGAGAVSAAGPPGA---AGPGPGQLCCLREDGERCG
                                     :  :::.:   :.:: :: ::: :::::: 
CCDS43                      MNGFSTEEDSREGPPAAPAAAAPGYGQSCCLIEDGERCV
                                    10        20        30         

        80        90       100       110       120       130       
pF1KB7 RAAGNASFSKRIQKSISQKKVKIELDKSARHLYICDYHKNLIQSVRNRRKRKGSDDDGGD
       : :::::::::.::::::::.:...:::.:::::::.:::.::::::.:::: ::: :::
CCDS43 RPAGNASFSKRVQKSISQKKLKLDIDKSVRHLYICDFHKNFIQSVRNKRKRKTSDD-GGD
      40        50        60        70        80        90         

       140       150       160       170       180       190       
pF1KB7 SPVQDIDTPEVDLYQLQVNTLRRYKRHFKLPTRPGLNKAQLVEIVGCHFRSIPVNEKDTL
       :: .: : :::::.:::::::::::::.:: ::::.:::::.: :. :::.::::::.::
CCDS43 SPEHDTDIPEVDLFQLQVNTLRRYKRHYKLQTRPGFNKAQLAETVSRHFRNIPVNEKETL
      100       110       120       130       140       150        

       200       210       220  
pF1KB7 TYFIYSVKNDKNKSDLKVDSGVH  
       .:::: ::..:.. : : ..:    
CCDS43 AYFIYMVKSNKSRLDQKSEGGKQLE
      160       170       180   




220 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 17:32:15 2016 done: Mon Nov  7 17:32:15 2016
 Total Scan time:  1.870 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]