FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7566, 277 aa
  1>>>pF1KB7566 277 - 277 aa - 277 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5786+/-0.000769; mu= 6.2224+/- 0.046
 mean_var=173.7093+/-36.224, 0's: 0 Z-trim(114.6): 174  B-trim: 0 in 0/50
 Lambda= 0.097311
 statistics sampled from 14948 (15134) to 14948 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.793), E-opt: 0.2 (0.465), width:  16
 Scan time:  2.850

The best scores are:                                      opt bits E(32554)
CCDS7670.1 2 gene_id:84504|Hs108|chr10             ( 277) 1884 275.8 2.4e-74
CCDS3607.1 1 gene_id:4825|Hs108|chr4               ( 367)  969 147.5 1.4e-35


>>CCDS7670.1 2 gene_id:84504|Hs108|chr10                  (277 aa)
 initn: 1884 init1: 1884 opt: 1884  Z-score: 1448.4  bits: 275.8 E(32554): 2.4e-74
Smith-Waterman score: 1884; 99.6% identity (100.0% similar) in 277 aa overlap (1-277:1-277)

               10        20        30        40        50        60
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGAQLPLGTPHGI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 SDILGRPVGAAGGGLLGGLPRLNGLASSAGVYFGPAAAVARGYPKPLAELPGRPPIFWPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 VVQGAPWRDPRLAGPAPAGGVLDKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERAR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 LAYSLGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
       ::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::::
CCDS76 LAYSLGMTESQVKVWFQNRRTKWRKRHAVEMASAKKKQDSDAEKLKVGGSDAEDDDEYNR
              190       200       210       220       230       240

              250       260       270       
pF1KB7 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
       :::::::::::::::::::::::::::::::::::::
CCDS76 PLDPNSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL
              250       260       270       

>>CCDS3607.1 1 gene_id:4825|Hs108|chr4                    (367 aa)
 initn: 1064 init1: 699 opt: 969  Z-score: 752.5  bits: 147.5 E(32554): 1.4e-35
Smith-Waterman score: 1007; 58.0% identity (71.3% similar) in 300 aa overlap (31-274:63-355)

               10        20        30        40        50          
pF1KB7 MDTNRPGAFVLSSAPLAALHNMAEMKTSLFPYALQGPAGFKAPALGGLGA------QLPL
                                     : . ..:.:.: :: :::..      ::  
CCDS36 TPLYPAAYPPLPAGPPSSSSSSSSSSSPSPPLGTHNPGGLKPPATGGLSSLGSPPQQLSA
             40        50        60        70        80        90  

           60             70                                       
pF1KB7 GTPHGISDILGRPV-----GAA------GG------------------------------
       .:::::.:::.::      :::      .:                              
CCDS36 ATPHGINDILSRPSMPVASGAALPSASPSGSSSSSSSSASASSASAAAAAAAAAAAAASS
            100       110       120       130       140       150  

              80           90         100        110       120     
pF1KB7 --GLLGGLPRLNGLASSA---GVYFGPAAAV--ARG-YPKPLAELPGRPPIFWPGVVQGA
         :::.::::...:.      :.::.:.::.  : : ::::::::::: :::::::.:. 
CCDS36 PAGLLAGLPRFSSLSPPPPPPGLYFSPSAAAVAAVGRYPKPLAELPGRTPIFWPGVMQSP
            160       170       180       190       200       210  

         130       140        150       160       170       180    
pF1KB7 PWRDPRLAGPAPAGGVL-DKDGKKKHSRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS
       :::: :::     :..: :::::.::.:::::::::::::::::::::::::::::::::
CCDS36 PWRDARLACTPHQGSILLDKDGKRKHTRPTFSGQQIFALEKTFEQTKYLAGPERARLAYS
            220       230       240       250       260       270  

          190       200       210       220       230       240    
pF1KB7 LGMTESQVKVWFQNRRTKWRKRHAAEMASAKKKQDSDAEKLKVGGSDAEDDDEYNRPLDP
       :::::::::::::::::::::.::::::.:::::::..:.:: .. . :.::.::.::::
CCDS36 LGMTESQVKVWFQNRRTKWRKKHAAEMATAKKKQDSETERLKGASENEEEDDDYNKPLDP
            280       290       300       310       320       330  

          250       260       270                
pF1KB7 NSDDEKITRLLKKHKPSNLALVSPCGGGAGDAL         
       ::::::::.:::::: :.       :::.:            
CCDS36 NSDDEKITQLLKKHKSSS-------GGGGGLLLHASEPESSS
            340       350              360       




277 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 05:33:48 2016 done: Sun Nov  6 05:33:48 2016
 Total Scan time:  2.850 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]