FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7560, 272 aa
  1>>>pF1KB7560 272 - 272 aa - 272 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.9539+/-0.000696; mu= 10.2078+/- 0.042
 mean_var=144.8885+/-29.385, 0's: 0 Z-trim(116.0): 4  B-trim: 734 in 2/50
 Lambda= 0.106551
 statistics sampled from 16608 (16609) to 16608 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.819), E-opt: 0.2 (0.51), width:  16
 Scan time:  2.690

The best scores are:                                      opt bits E(32554)
CCDS9359.1 RFXAP gene_id:5994|Hs108|chr13          ( 272) 1804 287.7 5.8e-78


>>CCDS9359.1 RFXAP gene_id:5994|Hs108|chr13               (272 aa)
 initn: 1804 init1: 1804 opt: 1804  Z-score: 1513.1  bits: 287.7 E(32554): 5.8e-78
Smith-Waterman score: 1804; 100.0% identity (100.0% similar) in 272 aa overlap (1-272:1-272)

               10        20        30        40        50        60
pF1KB7 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 MEAQGVAEGAGPGAASGVPHPAALAPAAAPTLAPASVAAAASQFTLLVMQPCAGQDEAAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 PGGSVGAGKPVRYLCEGAGDGEEEAGEDEADLLDTSDPPGGGESAASLEDLEDEETHSGG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 EGSSGGARRRGSGGGSMSKTCTYEGCSETTSQVAKQRKPWMCKKHRNKMYKDKYKKKKSD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS93 QALNCGGTASTGSAGNVKLEESADNILSIVKQRTGSFGDRPARPTLLEQVLNQKRLSLLR
              190       200       210       220       230       240

              250       260       270  
pF1KB7 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM
       ::::::::::::::::::::::::::::::::
CCDS93 SPEVVQFLQKQQQLLNQQVLEQRQQQFPGTSM
              250       260       270  




272 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 03:12:10 2016 done: Mon Nov  7 03:12:10 2016
 Total Scan time:  2.690 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]