FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7040, 462 aa
  1>>>pF1KB7040 462 - 462 aa - 462 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5708+/-0.00117; mu= 2.2839+/- 0.070
 mean_var=153.4840+/-31.502, 0's: 0 Z-trim(106.9): 38  B-trim: 117 in 1/50
 Lambda= 0.103524
 statistics sampled from 9265 (9280) to 9265 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.285), width:  16
 Scan time:  3.050

The best scores are:                                      opt bits E(32554)
CCDS13345.1 SEMG1 gene_id:6406|Hs108|chr20         ( 462) 3078 471.9 6.3e-133
CCDS13346.1 SEMG2 gene_id:6407|Hs108|chr20         ( 582) 2133 330.8 2.4e-90


>>CCDS13345.1 SEMG1 gene_id:6406|Hs108|chr20              (462 aa)
 initn: 3078 init1: 3078 opt: 3078  Z-score: 2500.0  bits: 471.9 E(32554): 6.3e-133
Smith-Waterman score: 3078; 100.0% identity (100.0% similar) in 462 aa overlap (1-462:1-462)

               10        20        30        40        50        60
pF1KB7 MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHY
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
              370       380       390       400       410       420

              430       440       450       460  
pF1KB7 EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT
       ::::::::::::::::::::::::::::::::::::::::::
CCDS13 EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT
              430       440       450       460  

>>CCDS13346.1 SEMG2 gene_id:6407|Hs108|chr20              (582 aa)
 initn: 3619 init1: 2115 opt: 2133  Z-score: 1735.6  bits: 330.8 E(32554): 2.4e-90
Smith-Waterman score: 2133; 75.0% identity (89.2% similar) in 436 aa overlap (1-436:1-436)

               10        20        30        40        50        60
pF1KB7 MKPNIIFVLSLLLILEKQAAVMGQKGGSKGRLPSEFSQFPHGQKGQHYSGQKGKQQTESK
       ::  :.::::::::::::::::::::::::.:::  :::::::::::: ::: .:.:.::
CCDS13 MKSIILFVLSLLLILEKQAAVMGQKGGSKGQLPSGSSQFPHGQKGQHYFGQKDQQHTKSK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 GSFSIQYTYHVDANDHDQSRKSQQYDLNALHKTTKSQRHLGGSQQLLHNKQEGRDHDKSK
       ::::::.::::: :::: .:::::::::::::.:::..:::::::::. :::::::::::
CCDS13 GSFSIQHTYHVDINDHDWTRKSQQYDLNALHKATKSKQHLGGSQQLLNYKQEGRDHDKSK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 GHFHRVVIHHKGGKAHRGTQNPSQDQGNSPSGKGISSQYSNTEERLWVHGLSKEQTSVSG
       :::: .:::::::.::.:::::::::::::::::.::: ::::.:::::::::::.:.::
CCDS13 GHFHMIVIHHKGGQAHHGTQNPSQDQGNSPSGKGLSSQCSNTEKRLWVHGLSKEQASASG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 AQKGRKQGGSQSSYVLQTEELVANKQQRETKNSHQNKGHYQNVVEVREEHSSKVQTSLCP
       ::::: ::::::::::::::::.:::::::::::::::::::::.::::::::.:::: :
CCDS13 AQKGRTQGGSQSSYVLQTEELVVNKQQRETKNSHQNKGHYQNVVDVREEHSSKLQTSLHP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 AHQDKLQHGSKDIFSTQDELLVYNKNQHQTKNLNQDQQHGRKANKISYQSSSTEERRLHY
       ::::.:::: ::::.::::::::::::::::::.:::.:::::.:::: :: ::::.::.
CCDS13 AHQDRLQHGPKDIFTTQDELLVYNKNQHQTKNLSQDQEHGRKAHKISYPSSRTEERQLHH
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 GENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKISYQSSSTEERRLHY
       ::..::::::..::  ::::: .::::.:.:: ::.:::..: :::::::::::::.:. 
CCDS13 GEKSVQKDVSKGSISIQTEEKIHGKSQNQVTIHSQDQEHGHKENKISYQSSSTEERHLNC
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB7 GENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGESGQSTNREQDLLSH
       ::.:.:: ::. ::  :::. . :::: :.  :.:   .:.. .  : ::.. :.  :. 
CCDS13 GEKGIQKGVSKGSISIQTEEQIHGKSQNQVRIPSQAQEYGHKENKISYQSSSTEERRLNS
              370       380       390       400       410       420

              430       440       450       460                    
pF1KB7 EQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT                  
        .:  ..  :.:...:                                            
CCDS13 GEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKMSYQSSSTEERRLNY
              430       440       450       460       470       480

>--
 initn: 962 init1: 618 opt: 618  Z-score: 512.7  bits: 104.5 E(32554): 3.1e-22
Smith-Waterman score: 618; 65.1% identity (85.6% similar) in 146 aa overlap (317-462:437-582)

        290       300       310       320       330       340      
pF1KB7 SYQSSSTEERRLHYGENGVQKDVSQSSIYSQTEEKAQGKSQKQITIPSQEQEHSQKANKI
                                     ::::: .::::.:.:::::.:::..: ::.
CCDS13 SYQSSSTEERRLNSGEKDVQKGVSKGSISIQTEEKIHGKSQNQVTIPSQDQEHGHKENKM
        410       420       430       440       450       460      

        350       360       370       380       390       400      
pF1KB7 SYQSSSTEERRLHYGENGVQKDVSQRSIYSQTEKLVAGKSQIQAPNPKQEPWHGENAKGE
       ::::::::::::.:: ...:::::: ::  : :::: ::::::.:::.:. : :.::::.
CCDS13 SYQSSSTEERRLNYGGKSTQKDVSQSSISFQIEKLVEGKSQIQTPNPNQDQWSGQNAKGK
        470       480       490       500       510       520      

        410       420       430       440       450       460  
pF1KB7 SGQSTNREQDLLSHEQKGRHQHGSHGGLDIVIIEQEDDSDRHLAQHLNNDRNPLFT
       ::::.. .:::::::::::... :  . .::: :.:  .: ::.:. :.::::. :
CCDS13 SGQSADSKQDLLSHEQKGRYKQESSESHNIVITEHEVAQDDHLTQQYNEDRNPIST
        530       540       550       560       570       580  




462 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 13:03:25 2016 done: Sun Nov  6 13:03:26 2016
 Total Scan time:  3.050 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]