FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6995, 222 aa
  1>>>pF1KB6995 222 - 222 aa - 222 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9679+/-0.000666; mu= 11.5142+/- 0.040
 mean_var=91.5757+/-17.686, 0's: 0 Z-trim(112.5): 60  B-trim: 0 in 0/52
 Lambda= 0.134024
 statistics sampled from 13181 (13241) to 13181 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.772), E-opt: 0.2 (0.407), width:  16
 Scan time:  2.350

The best scores are:                                      opt bits E(32554)
CCDS7955.1 PRG2 gene_id:5553|Hs108|chr11           ( 222) 1574 313.6 6.3e-86
CCDS58133.1 PRG2 gene_id:5553|Hs108|chr11          ( 211)  802 164.3 5.2e-41
CCDS7954.1 PRG3 gene_id:10394|Hs108|chr11          ( 225)  743 152.9 1.5e-37


>>CCDS7955.1 PRG2 gene_id:5553|Hs108|chr11                (222 aa)
 initn: 1574 init1: 1574 opt: 1574  Z-score: 1656.1  bits: 313.6 E(32554): 6.3e-86
Smith-Waterman score: 1574; 99.5% identity (100.0% similar) in 222 aa overlap (1-222:1-222)

               10        20        30        40        50        60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
              130       140       150       160       170       180

              190       200       210       220  
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
       :::::::::::::::::::::::::.::::::::::::::::
CCDS79 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
              190       200       210       220  

>>CCDS58133.1 PRG2 gene_id:5553|Hs108|chr11               (211 aa)
 initn: 770 init1: 770 opt: 802  Z-score: 849.7  bits: 164.3 E(32554): 5.2e-41
Smith-Waterman score: 1468; 94.6% identity (95.0% similar) in 222 aa overlap (1-222:1-211)

               10        20        30        40        50        60
pF1KB6 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 MKLPLLLALLFGAVSALHLRSETSTFETPLGAKTLPEDEETPEQEMEETPCRELEEEEEW
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSLQTFSQ
       :::::::::::::::::::::::::::::::::::::::::::::::::::         
CCDS58 GSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLL---------
               70        80        90       100       110          

              130       140       150       160       170       180
pF1KB6 AWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
         ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS58 --FTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWVDGSRW
               120       130       140       150       160         

              190       200       210       220  
pF1KB6 NFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
       :::::::::::::::::::::::::.::::::::::::::::
CCDS58 NFAYWAAHQPWSRGGHCVALCTRGGHWRRAHCLRRLPFICSY
     170       180       190       200       210 

>>CCDS7954.1 PRG3 gene_id:10394|Hs108|chr11               (225 aa)
 initn: 763 init1: 657 opt: 743  Z-score: 787.6  bits: 152.9 E(32554): 1.5e-37
Smith-Waterman score: 743; 50.2% identity (72.7% similar) in 227 aa overlap (1-222:1-225)

                10        20        30         40        50        
pF1KB6 MKLPLLLA-LLFGAVSALHLRSETSTFETPLGAKTLPED-EETPEQEMEETPCREL---E
       :.  :::  ::.:.::::::....  .:.      : .: . . ::: . .  .:.   :
CCDS79 MQCLLLLPFLLLGTVSALHLENDAPHLESLETQADLGQDLDSSKEQERDLALTEEVIQAE
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB6 EEEEWGSGSEDASKKDGAVESISVPDMVDKNLTCPEEEDTVKVVGIPGCQTCRYLLVRSL
        ::  .:. .:  . . :.::   :  .::.. ::.::: :.: : : :. :::::::. 
CCDS79 GEEVKASACQDNFEDEEAMESD--PAALDKDFQCPREEDIVEVQGSPRCKICRYLLVRTP
               70        80          90       100       110        

         120       130       140       150       160       170     
pF1KB6 QTFSQAWFTCRRCYRGNLVSIHNFNINYRIQCSVSALNQGQVWIGGRITGSGRCRRFQWV
       .::..:  .: ::: :::::::.::.:::::: .:..::.:::::: . :    .:: :.
CCDS79 KTFAEAQNVCSRCYGGNLVSIHDFNFNYRIQCCTSTVNQAQVWIGGNLRGWFLWKRFCWT
      120       130       140       150       160       170        

         180       190       200       210       220  
pF1KB6 DGSRWNFAYWAAHQPWSRGGHCVALCTRGGYWRRAHCLRRLPFICSY
       :::.::::::.  :: .  : ::::::.:::::::.: ..:::.::.
CCDS79 DGSHWNFAYWSPGQPGNGQGSCVALCTKGGYWRRAQCDKQLPFVCSF
      180       190       200       210       220     




222 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:22:28 2016 done: Sun Nov  6 21:22:28 2016
 Total Scan time:  2.350 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]