Result of FASTA (ccds) for
pFN21AB6958
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6958, 238 aa
1>>>pF1KB6958 238 - 238 aa - 238 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.4718+/-0.000672; mu= 11.1419+/- 0.041
mean_var=121.8645+/-24.290, 0's: 0 Z-trim(115.3): 10 B-trim: 365 in 1/49
Lambda= 0.116181
statistics sampled from 15884 (15892) to 15884 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.815), E-opt: 0.2 (0.488), width: 16
Scan time: 2.630
The best scores are: opt bits E(32554)
CCDS13477.1 EDN3 gene_id:1908|Hs108|chr20 ( 238) 1679 291.3 3.8e-79
CCDS13479.1 EDN3 gene_id:1908|Hs108|chr20 ( 219) 1388 242.5 1.7e-64
CCDS13478.1 EDN3 gene_id:1908|Hs108|chr20 ( 224) 1293 226.6 1.1e-59
CCDS77597.1 EDN3 gene_id:1908|Hs108|chr20 ( 192) 1291 226.2 1.2e-59
>>CCDS13477.1 EDN3 gene_id:1908|Hs108|chr20 (238 aa)
initn: 1679 init1: 1679 opt: 1679 Z-score: 1534.4 bits: 291.3 E(32554): 3.8e-79
Smith-Waterman score: 1679; 100.0% identity (100.0% similar) in 238 aa overlap (1-238:1-238)
10 20 30 40 50 60
pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
190 200 210 220 230
>>CCDS13479.1 EDN3 gene_id:1908|Hs108|chr20 (219 aa)
initn: 1388 init1: 1388 opt: 1388 Z-score: 1271.2 bits: 242.5 E(32554): 1.7e-64
Smith-Waterman score: 1388; 100.0% identity (100.0% similar) in 197 aa overlap (1-197:1-197)
10 20 30 40 50 60
pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
:::::::::::::::::
CCDS13 SNSRTAEKTDKEEEGKVRGANRGLCQRRLKSRTNKASRL
190 200 210
>>CCDS13478.1 EDN3 gene_id:1908|Hs108|chr20 (224 aa)
initn: 1374 init1: 1293 opt: 1293 Z-score: 1185.0 bits: 226.6 E(32554): 1.1e-59
Smith-Waterman score: 1545; 93.3% identity (93.7% similar) in 238 aa overlap (1-238:1-224)
10 20 30 40 50 60
pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 SNSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
.::::::::::::::::::::::::::::::::::::::::::
CCDS13 R--------------QVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
190 200 210 220
>>CCDS77597.1 EDN3 gene_id:1908|Hs108|chr20 (192 aa)
initn: 1286 init1: 1286 opt: 1291 Z-score: 1184.1 bits: 226.2 E(32554): 1.2e-59
Smith-Waterman score: 1291; 96.3% identity (97.9% similar) in 190 aa overlap (1-189:1-190)
10 20 30 40 50 60
pF1KB6 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 MEPGLWLLFGLTVTSAAGFVPCSQSGDAGRRGVSQAPTAARSEGDCEETVAGPGEETVAG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PGEGTVAPTALQGPSPGSPGQEQAAEGAPEHHRSRRCTCFTYKDKECVYYCHLDIIWINT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 PEQTVPYGLSNYRGSFRGKRSAGPLPGNLQLSHRPHLRCACVGRYDKACLHFCTQTLDVS
130 140 150 160 170 180
190 200 210 220 230
pF1KB6 S-NSRTAEKTDKEEEGKVEVKDQQSKQALDLHHPKLMPGSGLALAPSTCPRCLFQEGAP
.::: . .
CCDS77 RLKSRTNKASRL
190
238 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sun Nov 6 13:02:19 2016 done: Sun Nov 6 13:02:20 2016
Total Scan time: 2.630 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]