FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6914, 225 aa
  1>>>pF1KB6914 225 - 225 aa - 225 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7199+/-0.000826; mu= 11.3796+/- 0.049
 mean_var=64.9885+/-12.774, 0's: 0 Z-trim(106.8): 14  B-trim: 0 in 0/51
 Lambda= 0.159095
 statistics sampled from 9209 (9219) to 9209 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.283), width:  16
 Scan time:  2.040

The best scores are:                                      opt bits E(32554)
CCDS2321.1 MOB4 gene_id:25843|Hs108|chr2           ( 225) 1546 363.4 6.6e-101
CCDS63079.1 MOB4 gene_id:100529241|Hs108|chr2      ( 261) 1437 338.4 2.6e-93
CCDS2322.1 MOB4 gene_id:25843|Hs108|chr2           ( 193) 1322 312.0 1.7e-85
CCDS46480.1 MOB4 gene_id:25843|Hs108|chr2          ( 204) 1275 301.2 3.2e-82


>>CCDS2321.1 MOB4 gene_id:25843|Hs108|chr2                (225 aa)
 initn: 1546 init1: 1546 opt: 1546  Z-score: 1925.0  bits: 363.4 E(32554): 6.6e-101
Smith-Waterman score: 1546; 100.0% identity (100.0% similar) in 225 aa overlap (1-225:1-225)

               10        20        30        40        50        60
pF1KB6 MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 PEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 PEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECP
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 AIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 AIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
              130       140       150       160       170       180

              190       200       210       220     
pF1KB6 YENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS23 YENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
              190       200       210       220     

>>CCDS63079.1 MOB4 gene_id:100529241|Hs108|chr2           (261 aa)
 initn: 1437 init1: 1437 opt: 1437  Z-score: 1788.8  bits: 338.4 E(32554): 2.6e-93
Smith-Waterman score: 1437; 98.6% identity (100.0% similar) in 210 aa overlap (16-225:52-261)

                              10        20        30        40     
pF1KB6                MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQ
                                     :.:..:::::::::::::::::::::::::
CCDS63 AAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKDFYNWPDESFDEMDSTLAVQQYIQQ
              30        40        50        60        70        80 

          50        60        70        80        90       100     
pF1KB6 NIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 NIRADCSNIDKILEPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQ
              90       100       110       120       130       140 

         110       120       130       140       150       160     
pF1KB6 WIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 WIFLCAAHKTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYR
             150       160       170       180       190       200 

         170       180       190       200       210       220     
pF1KB6 IFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS63 IFSHAYFHHRQIFDEYENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
             210       220       230       240       250       260 

>>CCDS2322.1 MOB4 gene_id:25843|Hs108|chr2                (193 aa)
 initn: 1322 init1: 1322 opt: 1322  Z-score: 1648.3  bits: 312.0 E(32554): 1.7e-85
Smith-Waterman score: 1322; 100.0% identity (100.0% similar) in 193 aa overlap (33-225:1-193)

             10        20        30        40        50        60  
pF1KB6 MAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEPPE
                                     ::::::::::::::::::::::::::::::
CCDS23                               MDSTLAVQQYIQQNIRADCSNIDKILEPPE
                                             10        20        30

             70        80        90       100       110       120  
pF1KB6 GQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 GQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECPAI
               40        50        60        70        80        90

            130       140       150       160       170       180  
pF1KB6 DYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS23 DYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDEYE
              100       110       120       130       140       150

            190       200       210       220     
pF1KB6 NETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
       :::::::::::::::::::::::::::::::::::::::::::
CCDS23 NETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
              160       170       180       190   

>>CCDS46480.1 MOB4 gene_id:25843|Hs108|chr2               (204 aa)
 initn: 1275 init1: 1275 opt: 1275  Z-score: 1589.6  bits: 301.2 E(32554): 3.2e-82
Smith-Waterman score: 1343; 90.7% identity (90.7% similar) in 225 aa overlap (1-225:1-204)

               10        20        30        40        50        60
pF1KB6 MVMAEGTAVLRRNRPGTKAQDFYNWPDESFDEMDSTLAVQQYIQQNIRADCSNIDKILEP
       ::::::::::::::::::::                     :::::::::::::::::::
CCDS46 MVMAEGTAVLRRNRPGTKAQ---------------------YIQQNIRADCSNIDKILEP
               10        20                             30         

               70        80        90       100       110       120
pF1KB6 PEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 PEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQWIFLCAAHKTPKECP
      40        50        60        70        80        90         

              130       140       150       160       170       180
pF1KB6 AIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS46 AIDYTRHTLDGAACLLNSNKYFPSRVSIKESSVAKLGSVCRRIYRIFSHAYFHHRQIFDE
     100       110       120       130       140       150         

              190       200       210       220     
pF1KB6 YENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS46 YENETFLCHRFTKFVMKYNLMSKDNLIVPILEEEVQNSVSGESEA
     160       170       180       190       200    




225 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sun Nov  6 21:07:48 2016 done: Sun Nov  6 21:07:49 2016
 Total Scan time:  2.040 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]