Result of FASTA (omim) for
pFN21AB6868
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6868, 196 aa
1>>>pF1KB6868 196 - 196 aa - 196 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0190+/-0.000256; mu= 7.2584+/- 0.016
mean_var=130.6739+/-27.119, 0's: 0 Z-trim(124.6): 15 B-trim: 1824 in 1/57
Lambda= 0.112197
statistics sampled from 46552 (46567) to 46552 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.847), E-opt: 0.2 (0.546), width: 16
Scan time: 7.010
The best scores are: opt bits E(85289)
NP_001002244 (OMIM: 614534) anaphase-promoting com ( 196) 1440 242.9 2.6e-64
NP_001276349 (OMIM: 614534) anaphase-promoting com ( 141) 533 95.9 3.1e-20
NP_001276347 (OMIM: 614534) anaphase-promoting com ( 89) 408 75.6 2.7e-14
NP_001276348 (OMIM: 614534) anaphase-promoting com ( 89) 408 75.6 2.7e-14
NP_001002248 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001002245 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001002249 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001276343 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001276346 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001276345 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001002246 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_001276344 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
NP_057560 (OMIM: 614534) anaphase-promoting comple ( 84) 323 61.8 3.5e-10
NP_001002247 (OMIM: 614534) anaphase-promoting com ( 84) 323 61.8 3.5e-10
>>NP_001002244 (OMIM: 614534) anaphase-promoting complex (196 aa)
initn: 1440 init1: 1440 opt: 1440 Z-score: 1275.7 bits: 242.9 E(85289): 2.6e-64
Smith-Waterman score: 1440; 100.0% identity (100.0% similar) in 196 aa overlap (1-196:1-196)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGM
130 140 150 160 170 180
190
pF1KB6 EVQGVRPDLALAGGAS
::::::::::::::::
NP_001 EVQGVRPDLALAGGAS
190
>>NP_001276349 (OMIM: 614534) anaphase-promoting complex (141 aa)
initn: 588 init1: 526 opt: 533 Z-score: 484.2 bits: 95.9 E(85289): 3.1e-20
Smith-Waterman score: 533; 66.4% identity (73.8% similar) in 122 aa overlap (1-113:1-121)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 RAHPQV--PINTA------SPTPGQHTGSLMSREESSRSPDPTPPALDQETS-SLLRCTS
:::::. : .:: .:: . .: : :: . .: : . .: : : :
NP_001 RAHPQARCPATTARWCGASAPTASTCIAS-SSGCTHSRCSSTAPCAARNGSSRSEARPGS
70 80 90 100 110
120 130 140 150 160 170
pF1KB6 PWCLDHSCDLFGITDQVSADGPRACRQGARRRLPAGVGPVLPLLPHALHPQVAARTAGAA
:
NP_001 RWRGILRLLPHAGADGCWGQRP
120 130 140
>>NP_001276347 (OMIM: 614534) anaphase-promoting complex (89 aa)
initn: 401 init1: 401 opt: 408 Z-score: 377.7 bits: 75.6 E(85289): 2.7e-14
Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89)
80 90 100 110 120 130
pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG
.. : : . .. ...: . :: ::
NP_001 MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG
10 20 30
140 150 160 170 180 190
pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
40 50 60 70 80
>>NP_001276348 (OMIM: 614534) anaphase-promoting complex (89 aa)
initn: 401 init1: 401 opt: 408 Z-score: 377.7 bits: 75.6 E(85289): 2.7e-14
Smith-Waterman score: 408; 73.6% identity (83.9% similar) in 87 aa overlap (110-196:6-89)
80 90 100 110 120 130
pF1KB6 GSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCDLFGITDQVSADGPRACRQG
.. : : . .. ...: . :: ::
NP_001 MRTVASAGWHLTDAALTVSVPSMLS-ERPRL--QG
10 20 30
140 150 160 170 180 190
pF1KB6 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARRRLPAGVGPVLPLLPHALHPQVAARTAGAAALPHVPPGMEVQGVRPDLALAGGAS
40 50 60 70 80
>>NP_001002248 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
>>NP_001002245 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
>>NP_001002249 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
>>NP_001276343 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
>>NP_001276346 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
>>NP_001276345 (OMIM: 614534) anaphase-promoting complex (84 aa)
initn: 337 init1: 312 opt: 323 Z-score: 303.7 bits: 61.8 E(85289): 3.5e-10
Smith-Waterman score: 323; 78.4% identity (84.3% similar) in 51 aa overlap (1-51:1-51)
10 20 30 40 50 60
pF1KB6 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCPLHGESISRCLGWCPQPVPVLGG
::::::::::::::::::::::::::::::::::::: . :.. : :
NP_001 MKVKIKCWNGVATWLWVANDENCGICRMAFNGCCPDCKVPGDDCPLVWGQCSHCFHMHCI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RAHPQVPINTASPTPGQHTGSLMSREESSRSPDPTPPALDQETSSLLRCTSPWCLDHSCD
NP_001 LKWLHAQQVQQHCPMCRQEWKFKE
70 80
196 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 22:49:16 2016 done: Sat Nov 5 22:49:17 2016
Total Scan time: 7.010 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]