FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6817, 162 aa
  1>>>pF1KB6817 162 - 162 aa - 162 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1943+/-0.000273; mu= 13.6076+/- 0.017
 mean_var=66.6362+/-13.131, 0's: 0 Z-trim(118.8): 9  B-trim: 70 in 1/53
 Lambda= 0.157116
 statistics sampled from 32049 (32058) to 32049 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.767), E-opt: 0.2 (0.376), width:  16
 Scan time:  5.360

The best scores are:                                      opt bits E(85289)
NP_068575 (OMIM: 605384,615767) interleukin-21 iso ( 162) 1094 255.8 2.2e-68
NP_001193935 (OMIM: 605384,615767) interleukin-21  ( 153)  987 231.6 4.2e-61


>>NP_068575 (OMIM: 605384,615767) interleukin-21 isoform  (162 aa)
 initn: 1094 init1: 1094 opt: 1094  Z-score: 1348.8  bits: 255.8 E(85289): 2.2e-68
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB6 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_068 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
               70        80        90       100       110       120

              130       140       150       160  
pF1KB6 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
       ::::::::::::::::::::::::::::::::::::::::::
NP_068 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
              130       140       150       160  

>>NP_001193935 (OMIM: 605384,615767) interleukin-21 isof  (153 aa)
 initn: 1025 init1: 987 opt: 987  Z-score: 1218.0  bits: 231.6 E(85289): 4.2e-61
Smith-Waterman score: 987; 99.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
               70        80        90       100       110       120

              130       140       150       160  
pF1KB6 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
       ::::::::::::::::::::::::::.               
NP_001 TCPSCDSYEKKPPKEFLERFKSLLQKVSTLSFI         
              130       140       150            




162 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:29:27 2016 done: Mon Nov  7 15:29:28 2016
 Total Scan time:  5.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]