FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6817, 162 aa
  1>>>pF1KB6817 162 - 162 aa - 162 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3232+/-0.000612; mu= 12.6233+/- 0.037
 mean_var=66.8247+/-13.115, 0's: 0 Z-trim(111.8): 6  B-trim: 0 in 0/52
 Lambda= 0.156894
 statistics sampled from 12693 (12699) to 12693 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.39), width:  16
 Scan time:  1.930

The best scores are:                                      opt bits E(32554)
CCDS3727.1 IL21 gene_id:59067|Hs108|chr4           ( 162) 1094 255.5   1e-68
CCDS75189.1 IL21 gene_id:59067|Hs108|chr4          ( 153)  987 231.3 1.9e-61


>>CCDS3727.1 IL21 gene_id:59067|Hs108|chr4                (162 aa)
 initn: 1094 init1: 1094 opt: 1094  Z-score: 1347.1  bits: 255.5 E(32554): 1e-68
Smith-Waterman score: 1094; 100.0% identity (100.0% similar) in 162 aa overlap (1-162:1-162)

               10        20        30        40        50        60
pF1KB6 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS37 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
               70        80        90       100       110       120

              130       140       150       160  
pF1KB6 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
       ::::::::::::::::::::::::::::::::::::::::::
CCDS37 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
              130       140       150       160  

>>CCDS75189.1 IL21 gene_id:59067|Hs108|chr4               (153 aa)
 initn: 1025 init1: 987 opt: 987  Z-score: 1216.5  bits: 231.3 E(32554): 1.9e-61
Smith-Waterman score: 987; 99.3% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB6 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MRSSPGNMERIVICLMVIFLGTLVHKSSSQGQDRHMIRMRQLIDIVDQLKNYVNDLVPEF
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LPAPEDVETNCEWSAFSCFQKAQLKSANTGNNERIINVSIKKLKRKPPSTNAGRRQKHRL
               70        80        90       100       110       120

              130       140       150       160  
pF1KB6 TCPSCDSYEKKPPKEFLERFKSLLQKMIHQHLSSRTHGSEDS
       ::::::::::::::::::::::::::.               
CCDS75 TCPSCDSYEKKPPKEFLERFKSLLQKVSTLSFI         
              130       140       150            




162 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 15:29:26 2016 done: Mon Nov  7 15:29:27 2016
 Total Scan time:  1.930 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]