FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6784, 153 aa
  1>>>pF1KB6784 153 - 153 aa - 153 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0720+/-0.000721; mu= 12.5849+/- 0.043
 mean_var=58.3514+/-11.635, 0's: 0 Z-trim(108.1): 17  B-trim: 2 in 1/49
 Lambda= 0.167899
 statistics sampled from 9995 (10003) to 9995 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.707), E-opt: 0.2 (0.307), width:  16
 Scan time:  1.650

The best scores are:                                      opt bits E(32554)
CCDS4158.1 IL4 gene_id:3565|Hs108|chr5             ( 153) 1013 253.2 4.6e-68
CCDS4159.1 IL4 gene_id:3565|Hs108|chr5             ( 137)  625 159.2 8.2e-40


>>CCDS4158.1 IL4 gene_id:3565|Hs108|chr5                  (153 aa)
 initn: 1013 init1: 1013 opt: 1013  Z-score: 1335.4  bits: 253.2 E(32554): 4.6e-68
Smith-Waterman score: 1013; 100.0% identity (100.0% similar) in 153 aa overlap (1-153:1-153)

               10        20        30        40        50        60
pF1KB6 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
               70        80        90       100       110       120

              130       140       150   
pF1KB6 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
       :::::::::::::::::::::::::::::::::
CCDS41 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
              130       140       150   

>>CCDS4159.1 IL4 gene_id:3565|Hs108|chr5                  (137 aa)
 initn: 625 init1: 625 opt: 625  Z-score: 828.2  bits: 159.2 E(32554): 8.2e-40
Smith-Waterman score: 875; 89.5% identity (89.5% similar) in 153 aa overlap (1-153:1-137)

               10        20        30        40        50        60
pF1KB6 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQKTLCTELTVTDIFAAS
       :::::::::::::::::::::::::::::::::::::::::::::               
CCDS41 MGLTSQLLPPLFFLLACAGNFVHGHKCDITLQEIIKTLNSLTEQK---------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB6 KNTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
        :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS41 -NTTEKETFCRAATVLRQFYSHHEKDTRCLGATAQQFHRHKQLIRFLKRLDRNLWGLAGL
           50        60        70        80        90       100    

              130       140       150   
pF1KB6 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
       :::::::::::::::::::::::::::::::::
CCDS41 NSCPVKEANQSTLENFLERLKTIMREKYSKCSS
          110       120       130       




153 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 22:29:47 2016 done: Sat Nov  5 22:29:47 2016
 Total Scan time:  1.650 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]